IPUMS TERRA

09 May 2024

Our understanding of interactions between population and environment has been hampered by differences in the data structures and analysis methods and tools used within different disciplines, as well as a dearth of internationally comparable data. Closely integrating...

iReceptor

09 May 2024

iReceptor is a distributed data management system and scientific gateway for mining Next Generation sequence data from immune responses. The main goal of iReceptor is to connect a distributed network of NGS (next-generation sequencing) databases for antibody/B-cell...

IRESite

09 May 2024

The IRESite database presents information about the experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the...

iRODS

09 May 2024

The Integrated Rule Oriented Data System, iRODS, is open source data management software designed to manage data sets that are big, important, and complex. Hundreds of organizations worldwide use iRODS to control their records and research data. ...

ISfinder

09 May 2024

This database provides a list of insertion sequences (IS) isolated from bacteria and archae. It is organized into individual files containing their general features (name, size, origin, family.....) as well as their DNA and potential protein sequences. Some of the...

ISMARA

09 May 2024

ISMARA (Integrated System for Motif Actitivity Response Analysis) is an online tool that models genome-wide expression or ChIP-seq data, in terms of computationally predicted regulatory sites for transcription factors (TFs) and micro-RNAS (miRNAs).

IsoMAP for Isoscapes modeling, analysis and prediction

09 May 2024

IsoMAP is an online workspace for spatial analysis, modeling and prediction of stable isotope ratio variation in the natural environment (isoscapes). IsoMAP consists of a suite of web-based GIS and software tools allowing users to easily explore, develop, and...

ITSoneDB

09 May 2024

ITSoneDB is a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences. It is aimed at supporting metabarcoding surveys of fungal and other microbial eukaryotic environmental communities. The sequences were extracted from...

IU Cyber Gateway

09 May 2024

IU Cybergateway provides IU users with easy job submissions to IU computing resources, BigRed2, Karst and Mason. Users can also monitor and manage running jobs in IU computing resources, share research experimental data with fellow researchers and can equest their...

Jalview

09 May 2024

Jalview is a free program for multiple sequence alignment editing, visualisation and analysis. Use it to view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and...

Jupyter Notebook

09 May 2024

The Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data...

KBase: The U.S. Department of Energy Systems Biology Knowledgebase

09 May 2024

The Department of Energy Systems Biology Knowledgebase (KBase) is a software and data platform designed to meet the grand challenge of systems biology: predicting and designing biological function. KBase integrates data and tools in a unified graphical interface so...

KEGGanim

09 May 2024

KEGGanim is a novel web-based tool for visualizing experimental data in the context of biological pathways. KEGGanim produces animations or static images of KEGG pathways by overlaying public or user uploaded high-thourghput data over handdrawn KEGG pathway maps. ...

Keycloak - Open Source Identity and Access Management

09 May 2024

Keycloak is an open source Identity and Access Management solution aimed at modern applications and services. It makes it easy to secure applications and services with little to no code.

KnowEnG

09 May 2024

KnowEnG, The Knowledge Engine for Genomics, will transform the way biomedical researchers analyze their genome-wide data by integrating multiple analytical methods derived from the most advanced data mining and machine learning research. Embedded with the breadth of...

LAMMPS

09 May 2024

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or...

Language Applications (LAPPS) Grid

09 May 2024

The LAPPS Grid is a framework for text analysis and text mining. It provides seamless access to a wide range of Natural Language Processing (NLP) tools and resources (e.g., popular public tools such as StanfordNLP, OpenNLP, NLTK, LingPipe),as well as a state-...

LASP Interactive Solar IRradiance Datacenter (LISIRD)

09 May 2024

The LASP Interactive Solar IRradiance Datacenter (LISIRD) is a website where researchers can discover, visualize, and download solar data from a variety of space missions, instruments, models, and laboratories. LISIRD focuses on making heliophysics research as...

LearnSphere

09 May 2024

This project is creating a community software infrastructure, called LearnSphere, that supports sharing, analysis and collaboration across a wide variety of educational data. LearnSphere supports researchers as they improve their understanding of human learning. It...

LegumeIP

09 May 2024

LegumeIP is an integrative database and bioinformatics platform for comparative genomics and transcriptomics to facilitate the study of gene function and genome evolution in legumes,to understand mechanisms that are fundamental to the legume species, especially the...

LHC@Home

09 May 2024

LHC@Home is a volunteer computing platform where you donate idle time on your computer to help physicists compare theory with experiment, in the search for new fundamental particles and answers to questions about the Universe.

LiceBase

09 May 2024

LiceBase is a database for sea lice genomics. LiceBase provides the genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, Blast functionality and access to related high-thoughput genomics data. Sea lice...

Liferay CE

09 May 2024

Liferay Portal is a free and open source enterprise portal software product. Distributed under the GNU Lesser General Public License, Liferay was declared "Best Open Source Portal" by InfoWorld in 2007. It is primarily used to power corporate intranets and extranets....

LIPID MAPS Lipidomics Gateway

09 May 2024

LIPID MAPS Lipidomics Gateway was created in 2003 via an NIH “Glue Grant” to provide access to lipid nomenclature, databases, tools, protocols, standards, tutorials, meetings, publications, and other resources and serving the international lipid research community. ...

LIS - Legume Information System

09 May 2024

LIS is a collaborative, community resource to facilitate crop improvement by integrating genetic, genomic, and trait data across legume species.