Skip to main content

Resources: All

Find a resource
  1. collaboration x
  2. genome x
  3. classroom x
  4. database x
  1. 3DEM (3-D ELECTRON MICROSCOPY)

    09 May 2024

    A web-based research platform focused on developing and disseminating new technologies for enhanced resolution 3-dimensional electron microscopy.

  2. Amos Gateway

    09 May 2024

    The overarching goal of the project is create a comprehensive cyberinfrastructure for the atomic, molecular, and optical science (AMOS) community where practitioners can access a synergistic, full-scope platform for computational AMOS. The developers...

  3. Anecdata.org

    09 May 2024

    Anecdata.org is a free online citizen science platform developed by the Community Lab at the MDI Biological Laboratory in Bar Harbor, Maine.Anecdata.org is used by hundreds of individuals and organizations to gather and access citizen science...

  4. BamBam

    09 May 2024 | Tools

    BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...

  5. Benchmark Energy & Geometry Database (BEGDB)

    09 May 2024 | Science Gateways

    The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate QM calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.

  6. BIGNASim

    09 May 2024 | Science Gateways

    BIGNASim, a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.

  7. BioFragment Database (BFDb)

    09 May 2024 | Science Gateways

    The BioFragment Database (BFDb) is an open-data platform for computational chemistry analysis of noncovalent interactions and collects >3000 bifragment contacts directly from biological systems.

  8. BRENDA

    09 May 2024 | Science Gateways

    BRENDA is the main collection of enzyme functional data available to the scientific community.

  9. C++Explorer

    09 May 2024 | Science Gateways

    This repo builds a JupyterHub/Jupyter notebook server which offers an interactive C++ experience. The primary interface for this is through cling notebooks (cling is the C++ interpreter). We extend the cling notebook with certain magics, (namely %%writefile and...

  10. CAZY

    09 May 2024 | Science Gateways

    The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

  11. Center for Academic Research and Training in Anthropogeny (CARTA)

    09 May 2024 | Science Gateways

    CARTA is a virtual organization formed in order to promote transdisciplinary research into human origins, drawing on methods from a number of traditional disciplines spanning the social, biomedical, biological, computational and engineering, physical and chemical...

  12. Chem Compute

    09 May 2024 | Science Gateways

    The Chem Compute website allows students to easily access state of the art computational software for free. Our hope is that this will enable faculty to incorporate computational chemistry into their undergraduate teaching and research curriculum without the hassle...

  13. Citizen Science Alliance

    09 May 2024 | Science Gateways

    The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...

  14. Citizen Science Alliance

    09 May 2024 | Science Gateways

    The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...

  15. COCALC

    09 May 2024 | Science Gateways

    CoCalc(Collaborative Calculation in the Cloud) is a sophisticated web service for online computation and provides the collaborative environment to share your files privately with project collaborators.

  16. Community Surface Dynamics Modeling System (CSDMS)

    09 May 2024 | Science Gateways

    CSDMS is an organization that promotes computational modeling of earth-surface processes by providing support for community, computing, and education. The Community Surface Dynamics Modeling System (CSDMS) deals with the Earth's surface - the ever-changing, dynamic...

  17. CottonGen

    09 May 2024 | Science Gateways

    CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.

  18. Crops in silico

    09 May 2024 | Science Gateways

    Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...

  19. CyberGIS Gateway

    09 May 2024 | Science Gateways

    Geographic information is collected to support scientific investigations and decision-making in a wide variety of application domains (e.g., environment science, transportation, public health, and business). Enormous computational resources are needed to store and...

  20. DataHub

    09 May 2024 | Science Gateways

    DataHub is a cross-domain platform for preserving, sharing, and discovering data produced by scientific research. Datasets are organized by experiments or cases, with a simple common structure for metadata, file collections, and data tables containing measurements...

  21. DesignSafe-CI

    09 May 2024 | Science Gateways

    DesignSafe-ci.org (DesignSafe) is the CI component of the NHERI collaboration. DesignSafe embraces a “cloud” strategy for the “big data” generated in natural hazards engineering research. It supports research workflows, data analysis and visualization, and the full...

  22. DipCheck

    09 May 2024 | Science Gateways

    DipCheck is a validation tool for the evaluation of protein backbone geometry, developed by Joana Pereira and Victor Lamzin at the EMBL Hamburg. The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of the geometry of a 5-atom dipeptide unit:...

  23. Earth Science Information Partners (ESIP)

    09 May 2024 | Science Gateways

    The Federation of Earth Science Information Partners (ESIP) is an open, networked community that brings together science, data and information technology practitioners. Participation in ESIP is beneficial because it provides an intellectual commons to expose, gather...

  24. eBird

    09 May 2024 | Science Gateways

    eBird began with a simple idea—that every birdwatcher has unique knowledge and experience. Our goal is to gather this information in the form of checklists of birds, archive it, and freely share it to power new data-driven approaches to science, conservation and...

  25. European Variation Archive (EVA)

    09 May 2024 | Science Gateways

    The European Variation Archive (EVA) is an open-access database of all types of genetic variation data from all species.