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  1. ADCIRC

    09 May 2024

    ADCIRC is a system of computer programs for solving time dependent, free surface circulation and transport problems in two and three dimensions. These programs utilize the finite element method in space allowing the use of highly flexible, unstructured grids. Typical...

  2. Amber

    09 May 2024

    Amber is a suite of biomolecular simulation programs. The term "Amber" refers to two things. First, it is a set of molecular mechanical force fields for the simulation of biomolecules (these force fields are in the public domain, and are used in a variety of...

  3. Apache Airavata

    09 May 2024

    Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.

  4. Apache Airavata

    09 May 2024

    Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.

  5. AtlanticWave-Software Defined Exchange (SDX)

    09 May 2024

    AtlanticWave-Software Defined Exchange (SDX) is a distributed intercontinental experimental SDX, supporting research, experimental deployments, prototyping and interoperability testing, on national and international scales.

  6. BamBam

    09 May 2024 | Tools

    BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...

  7. Benchmark Energy & Geometry Database (BEGDB)

    09 May 2024 | Science Gateways

    The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate QM calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.

  8. BIGNASim

    09 May 2024 | Science Gateways

    BIGNASim, a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.

  9. BioFragment Database (BFDb)

    09 May 2024 | Science Gateways

    The BioFragment Database (BFDb) is an open-data platform for computational chemistry analysis of noncovalent interactions and collects >3000 bifragment contacts directly from biological systems.

  10. BOINC: Compute for Science

    09 May 2024 | Science Gateways

    BOINC lets you help cutting-edge science research using your computer (Windows, Mac, Linux) or Android device. BOINC downloads scientific computing jobs to your computer and runs them invisibly in the background. It's easy and safe. About 30 science projects use...

  11. BRENDA

    09 May 2024 | Science Gateways

    BRENDA is the main collection of enzyme functional data available to the scientific community.

  12. Brown Dog

    09 May 2024 | Science Gateways

    Brown Dog's goal is to prototype a highly distributed and extensible science driven Data Transformation Service (DTS). As a component of a national research cyberinfrastructure Brown Dog aims at making past and present research data more accessible and more useful to...

  13. BUSCO

    09 May 2024 | Science Gateways

    BUSCO v3 provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.

  14. C++Explorer

    09 May 2024 | Science Gateways

    This repo builds a JupyterHub/Jupyter notebook server which offers an interactive C++ experience. The primary interface for this is through cling notebooks (cling is the C++ interpreter). We extend the cling notebook with certain magics, (namely %%writefile and...

  15. Cactus Code

    09 May 2024 | Science Gateways

    Cactus provides computational scientists and engineers with a collaborative, modular and portable programming environment for parallel high performance computing. Cactus can make use of many other technologies for HPC, such as Samrai, HDF5, PETSc and PAPI, and...

  16. CANARIE's Research Platforms

    09 May 2024 | Science Gateways

    The goal of CANARIE’s Research Software Program is to accelerate discovery and give Canada a first-mover advantage in accessing and leveraging digital infrastructure resources and tools.

  17. CAZY

    09 May 2024 | Science Gateways

    The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

  18. CILogon

    09 May 2024 | Science Gateways

    CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...

  19. CILogon

    09 May 2024 | Science Gateways

    CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...

  20. Cloudmesh Client Toolkit

    09 May 2024 | Science Gateways

    The cloudmesh client toolkit is a lightweight client interface of accessing heterogeneous clouds, clusters, and workstations right from the users computer. The user can manage his own set of resources he would like to utilize. Thus the user has the freedom to...

  21. Clowder

    09 May 2024 | Science Gateways

    Clowder is a research data management system designed to support any data format and multiple research domains. The core software has been in development for the past five years with funding from a variety of sources. Clowder is open source software and we are always...

  22. Code Ocean

    09 May 2024 | Science Gateways

    Code Ocean is a cloud-based computational reproducibility platform that provides researchers and developers an easy way to share, discover and run code published in academic journals and conferences.

  23. CottonGen

    09 May 2024 | Science Gateways

    CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.

  24. Crops in silico

    09 May 2024 | Science Gateways

    Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...

  25. CyberGIS Toolkit

    09 May 2024 | Science Gateways

    CyberGIS Toolkit is a suite of loosely coupled open-source geospatial software components that provide computationally scalable spatial analysis and modeling capabilities enabled by advanced cyberinfrastructure. CyberGIS Toolkit represents a deep approach to CyberGIS...