Clowder

09 May 2024

Clowder is a research data management system designed to support any data format and multiple research domains. The core software has been in development for the past five years with funding from a variety of sources. Clowder is open source software and we are always...

MDAnalysis

09 May 2024

MDAnalysis is an object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, Amber or DL_POLY; it also reads other formats (e.g. PDB files and XYZ format trajectories; see the supported coordinate formats for...

Brown Dog

09 May 2024

Brown Dog's goal is to prototype a highly distributed and extensible science driven Data Transformation Service (DTS). As a component of a national research cyberinfrastructure Brown Dog aims at making past and present research data more accessible and more useful to...

Drupal

09 May 2024

Drupal is content management software. It's used to make many of the websites and applications you use every day. Drupal has great standard features, like easy content authoring, reliable performance, and excellent security. But what sets it apart is its flexibility;...

ERGO

09 May 2024

Ergo, previously MAEviz, is an open-source project that helps reduce the time from discovery gap that exists between researchers, practitioners, and decision makers by integrating the latest research findings, most accurate data, and new methodologies into a single...

Trellis

09 May 2024

Trellis is an interactive web-based application for argumentation and decision-making. Using Trellis, users can come to individual and collaborative conclusions on virtually any topic, from scientific discourse to political and policy views to deciding which product...

Zenodo

09 May 2024

As CERN service, it is supported by European Commission, and powered by Invenio, digital repositories. It is a free and open-source software for the long-tail of science, enabling researchers to share and preserve any research outputs in any size, any format and from...

WINGS

09 May 2024

WINGS is a semantic workflow system that assists scientists with the design of computational experiments. A computational experiment specifies how selected datasets are to be processed by a series of software components in a particular configuration. Earth scientists...

SLATE and the Mobility of Capability

09 May 2024

SLATE (Services Layer at the Edge) is a new project that, when complete, will implement “cyberinfrastructure as code” by augmenting the canonical Science DMZ pattern with a generic, programmable, secure and trusted underlayment platform.

3DEM (3-D ELECTRON MICROSCOPY)

09 May 2024

A web-based research platform focused on developing and disseminating new technologies for enhanced resolution 3-dimensional electron microscopy.

Network for Computational Nanotechnology and nanoHUB

09 May 2024 | Science Gateways

The Network for Computational Nanotechnology (NCN) has a mission to connect theory, experiment, and computation in a way that will transform nanoscience into nanotechnology. While addressing challenges in the field, NCN researchers produce new algorithms, approaches,...

Chem Compute

09 May 2024 | Science Gateways

The Chem Compute website allows students to easily access state of the art computational software for free. Our hope is that this will enable faculty to incorporate computational chemistry into their undergraduate teaching and research curriculum without the hassle...

Open OnDemand

09 May 2024 | Science Gateways

Open OnDemand is an NSF-funded open-source HPC portal based on OSC’s original OnDemand portal. The goal of Open OnDemand is to provide an easy way for system administrators to provide web access to their HPC resources, including, but not limited to: ...

Materials Data Curation System

09 May 2024 | Science Gateways

The NIST Materials Data Curation System (MDCS) provides a means for capturing, sharing, and transforming materials data into a structured format that is XML based amenable to transformation to other formats. The data are organized using user-selected templates...

MetaboLights

09 May 2024 | Science Gateways

MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and...

MicroScope

09 May 2024 | Science Gateways

MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.

BUSCO

09 May 2024 | Science Gateways

BUSCO v3 provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.

PHYLOViZ

09 May 2024 | Science Gateways

PHYLOViZ is a platform independent JAVA software that allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data.

Galaxy Software Framework

09 May 2024 | Science Gateways

Galaxy software framework is an open-source application. Its goal is to develop and maintain a system that enables researchers without informatics expertise to perform computational analyses through the web. A user interacts with Galaxy through the web by uploading...

Suave

09 May 2024 | Science Gateways

The project is currently funded by National Science Foundation under award ACI-1443082 “EAGER: Development of a Novel Online Visual Survey Data Analysis Tool and Assessment of its Capabilities to Enhance Learning of Quantitative Research Methods

Suave

09 May 2024 | Science Gateways

The project is currently funded by National Science Foundation under award ACI-1443082 “EAGER: Development of a Novel Online Visual Survey Data Analysis Tool and Assessment of its Capabilities to Enhance Learning of Quantitative Research Methods

SETI@Home

09 May 2024 | Science Gateways

SETI@home is a scientific experiment, based at UC Berkeley, that uses Internet-connected computers in the Search for Extraterrestrial Intelligence (SETI). You can participate by running a free program that downloads and analyzes radio telescope data.

Compute Canada

09 May 2024 | Science Gateways

Compute Canada enables Canadian researchers to perform world-class research using Advanced Research Computing (ARC) strategies. The organization helps researchers who need ARC in all disciplines and at all scales; from individual researchers to some of the largest...

OII Gateway

09 May 2024 | Science Gateways

The Oklahoma Innovation Institute (OII) is a not-for-profit corporation with the mission of building an innovative and entrepreneurial economy in Oklahoma with the central theme of “Research to High Impact Jobs”. The Tandy Super Computing Center manages The Tandy...

HABRI Central

09 May 2024 | Science Gateways

HABRI Central is an online platform for open research and collaboration into the relationships between humans and animals, specifically companion animals. HABRI Central uses a combination of library resources to facilitate the discovery, access, production, and...