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  1. Benchmark Energy & Geometry Database (BEGDB)

    09 May 2024

    The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate QM calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.

  2. ArrayExpress

    09 May 2024

    ArrayExpress Archive of Functional Genomics Data stores data from high-throughput functional genomics experiments, and provides these data for reuse to the research community.

  3. Tripal

    09 May 2024

    Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database, and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content...

  4. Tripal

    09 May 2024

    Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database, and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content...

  5. SUPER Project

    09 May 2024

    The Institute for Sustained Performance, Energy, and Resilience (SUPER) project is a broadly-based SciDAC institute with expertise in compilers and other system tools, performance engineering, energy management, and resilience. The goal of the project is to ensure...

  6. MetalPDB

    09 May 2024

    MetalPDB collects and allows easy access to the knowledge on metal sites in biological macromolecules, starting from the structural information contained in the Protein Data Bank (PDB).

  7. MetalPDB

    09 May 2024

    MetalPDB collects and allows easy access to the knowledge on metal sites in biological macromolecules, starting from the structural information contained in the Protein Data Bank (PDB).

  8. iRODS

    09 May 2024

    The Integrated Rule Oriented Data System, iRODS, is open source data management software designed to manage data sets that are big, important, and complex. Hundreds of organizations worldwide use iRODS to control their records and research data. ...

  9. SwissRegulon Portal

    09 May 2024

    A repository of computational biology tools and databases developed by the van Nimwegen lab

  10. CoGe(Comparative Genomics)

    09 May 2024

    CoGe is a platform for performing Comparative Genomics research. It provides an open-ended network of interconnected tools to manage, analyze, and visualize next-gen data.

  11. Earth Life Consortium (ELC)

    09 May 2024

    The Earth-Life Consortium (ELC) seeks to make all paleobiological data easily discoverable, accessible, and analyzable, with the larger goal of understanding the interactions between the Earth's biological and geophysical systems across all timescales of the Earth's...

  12. COSMIC2 Science Gateway

    09 May 2024 | Science Gateways

    Structural biology is in the midst of a revolution. Instrumentation and software improvements have allowed for the full realization of cryo-electron microscopy (cryo-EM) as a tool capable of determining atomic structures of protein and macromolecular samples. These...

  13. Keycloak - Open Source Identity and Access Management

    09 May 2024 | Science Gateways

    Keycloak is an open source Identity and Access Management solution aimed at modern applications and services. It makes it easy to secure applications and services with little to no code.

  14. ROBETTA - Full-chain Protein Structure Prediction Server

    09 May 2024 | Science Gateways

    Robetta provides both ab initio and comparative models of protein domains. Domains without a detectable PDB homolog are modeled with the Rosetta de novo protocol (Simons et al. (1997) J Mol Biol. 268:209-225, Bradley et al. (2005) Science 309 (5742), 1868-71)....

  15. OpenTopography

    09 May 2024 | Science Gateways

    OpenTopography facilitates community access to high-resolution, Earth science-oriented, topography data, and related tools and resources. OpenTopography is supported by the National Science Foundation under Award Numbers 1948997, 1948994 & 1948857.

  16. TAPIS

    09 May 2024 | Science Gateways

    The Tapis Framework provides a hosted, unified web-based API for securely managing computational workloads across institutions so that experts can focus on their research instead of the technology needed to accomplish it. The advanced computing infrastructure landscape has evolved tremendously...

  17. NCI Community Hub

    09 May 2024 | Science Gateways

    The NCI Community Hub is a site for community research and collaboration in cancer research and informatics. Users can share resources, host online communities, and use collaboration tools . These resources are available to visitors ...

  18. Whole Tale

    09 May 2024 | Science Gateways

    Merging Science and Cyberinfrastructure PathwayWhole Tale is an NSF-funded Data Infrastructure Building Block (DIBBS) initiative to build a scalable, open source, web-based, multi-user platform for reproducible research enabling the creation,...

  19. BIGNASim

    09 May 2024 | Science Gateways

    BIGNASim, a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.

  20. GeoMapApp

    09 May 2024 | Science Gateways

    GeoMapApp is an earth science exploration and visualization application that is continually being expanded as part of the Marine Geoscience Data System (MGDS) at the Lamont-Doherty Earth Observatory of Columbia University. The application provides direct access to...

  21. Plant Genomics

    09 May 2024 | Science Gateways

    Plant genomics is a simple expansion of the scope of genomics at the National Center for Biotechnology Information (NCBI). NCBI provides the tools for storage of and analysis of nucleotide sequence such as, respectively, GenBank and BLAST and the capability to...

  22. VIDIA

    09 May 2024 | Science Gateways

    Virtual Infrastructure for Data Intensive Analysis (VIDIA) unites SUNY Oneonta and University at Buffalo's Center for Computational Research to support the analysis of large datasets by social science students at Primarily Undergraduate Institutions (PUIs). VIDIA is...

  23. CANARIE's Research Platforms

    09 May 2024 | Science Gateways

    The goal of CANARIE’s Research Software Program is to accelerate discovery and give Canada a first-mover advantage in accessing and leveraging digital infrastructure resources and tools.

  24. Multiscale Complex Genomics (MuG) Virtual Research Environment

    09 May 2024 | Science Gateways

    The MuG Virtual Research Environment supports the expanding 3D/4D genomics community by developing tools to integrate the navigation in genomics data from sequence to 3D/4D chromatin dynamics data.

  25. maizeGDB

    09 May 2024 | Science Gateways

    MaizeGDB (maize genetics and genomics database) is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.