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SoyBase
09 May 2024
SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...
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Terra: the EOS Flagship
09 May 2024
Terra explores the connections between Earth's atmosphere, land, snow and ice, ocean, and energy balance to understand Earth's climate and climate change and to map the impact of human activity and natural disasters on communities and ecosystems.
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Medicago truncatula genome database
09 May 2024
Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...
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MicroScope
09 May 2024 | Science Gateways
MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.
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Reactome
09 May 2024 | Science Gateways
REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...
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OMA
09 May 2024 | Science Gateways
The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.
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Earth Science Information Partners (ESIP)
09 May 2024 | Science Gateways
The Federation of Earth Science Information Partners (ESIP) is an open, networked community that brings together science, data and information technology practitioners. Participation in ESIP is beneficial because it provides an intellectual commons to expose, gather...
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Critical Zone Observatories
09 May 2024 | Science Gateways
The National CZO Program is a community resource. The Program serves the international scientific community through research, infrastructure, data, and models. We focus on how components of the Critical Zone interact, shape Earth's surface, and support life. If you...
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EarthCube
09 May 2024 | Science Gateways
EarthCube was initiated by the National Science Foundation (NSF) in 2011 to transform geoscience research by developing cyberinfrastructure to improve access, sharing, visualization, and analysis of all forms of geosciences data and related resources. As a...
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CyVerse
09 May 2024 | Science Gateways
CyVerse fills a niche created by the computing epoch and a rapidly evolving world. Developing solutions to today’s grand scientific challenges means that we must understand how the organisms that contribute to our food, fuels, and ecosystem are shaped by interactions...
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DataOne
09 May 2024 | Science Gateways
DataONE is a community driven project providing access to data across multiple member repositories, supporting enhanced search and discovery of Earth and environmental data. DataONE promotes best practices in data management through responsive educational resources...
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HRGRN
09 May 2024 | Science Gateways
We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...
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e-Biogenouest
09 May 2024 | Science Gateways
e-Biogenouest is an open, web-based platform for scientific collaboration in Life Sciences. It represents the gate towards a Western France Virtual Research Environment (VRE) disseminating e-Science concepts into Life Sciences. This VRE is a first step to go towards...
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The Earth System Grid (ESG)
09 May 2024 | Science Gateways
The Earth System Grid (ESG) a DOE SciDAC sponsored project, provides access to data, models, and tools for the global climate change research community. The Earth System Grid (ESG) a DOE SciDAC sponsored project, provides access to data, models, and tools for the...
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The Triticeae Toolbox (T3)
09 May 2024 | Science Gateways
T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data...
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VEP
09 May 2024 | Science Gateways
VEP (Variant Effect Predictor) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.
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Vega
09 May 2024 | Science Gateways
Vega is a repository for high-quality gene models produced by the manual annotation of vertebrate genomes.
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NCBI Genome Workbench
09 May 2024 | Science Gateways
Genome Workbench offers researchers a rich set of integrated tools for studying and analyzing genetic data. Users can explore and compare data from multiple sources including the NCBI databases or the user’s own private data. Data analysis in Genome Workbench is...
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earthscope
09 May 2024 | Science Gateways
EarthScope is a program of the National Science Foundation (NSF) that has deployed thousands of seismic, GPS, and other geophysical instruments to study the structure and evolution of the North American continent and the processes that cause earthquakes and volcanic...
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SERC
09 May 2024 | Science Gateways
The Science Education Resource Center (SERC) is a grant-funded office at Carleton College, founded to improve education in the Earth sciences and beyond.
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CottonGen
09 May 2024 | Science Gateways
CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.
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Crops in silico
09 May 2024 | Science Gateways
Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...
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SwissRegulon Portal
09 May 2024 | Science Gateways
A repository of computational biology tools and databases developed by the van Nimwegen lab
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PeanutBase
09 May 2024 | Science Gateways
This web portal is designed to provide convenient access to peanut genetic and genomic data deriving from U.S. and international research, and particularly from the Peanut Genomics Initiative: The U.S. industry has embarked on an ambitious plan to map the peanut...
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GeoMapApp
09 May 2024 | Science Gateways
GeoMapApp is an earth science exploration and visualization application that is continually being expanded as part of the Marine Geoscience Data System (MGDS) at the Lamont-Doherty Earth Observatory of Columbia University. The application provides direct access to...