Custos Admin Gateway

26 Jun 2024 | Science Gateways

Custos provides security services, including identity management, authorization management, and resource credential management, for science gateways

EDGE-Bioinformatics-Gateway

26 Jun 2024 | Science Gateways

The EDGE Bioinformatics Science Gateway was developed to help biologists, educators and public-health professionals process Next Generation Sequencing data (in the form of raw FASTQ files), even if they have little to no bioinformatics expertise. EDGE is a highly integrated and interactive...

CyberWater

26 Jun 2024 | Science Gateways

To tackle fundamental scientific questions regarding health, resilience, and sustainability of water resources that encompass hydrological, biological, environmental, atmospheric, and other geosciences that define the Earth system, researchers need to be able to easily access diverse data...

Biolearns

26 Jun 2024 | Science Gateways

To further facilitate the general needs of online real-time co-expression analysis, we develop biolearns, a python-based co-expression network analysis web tool.

Future Water Indiana

26 Jun 2024 | Science Gateways

This project is part of Indiana University's Grand Challenges Prepared for Environmental Change project. For this project, we are building a computer-based watershed model of the Wabash River Basin. This model will be used to investigate climate change impacts on water resources in Indiana....

GEO-ABM for Analysis of COVID-19 Transmission

26 Jun 2024 | Science Gateways

This gateway helps schools and school districts understand the risks of COVID-19 transmission in schools and the potential effects of non-pharmaceutical interventions using a spatiallly-explicit agent-based model

Global Floods Monitoring

26 Jun 2024 | Science Gateways

"We are researchers from the approved project ASC190069: Deep Convolutional Neural Network based Learning of Disaster Induced Changes in Remote Sensing Images. With our ongoing progress and success in using the Bridges2-GPU-AI infrastructure, we are planning to develop a science gateway...

High-Resolution Modeling of Hydrodynamic Experiments with UltraScan

26 Jun 2024 | Science Gateways

This XSEDE ACCESS portal provides access to the high performance computing back-end of UltraScan (https://www.ultrascan.aucsolutions.comuthscsa.edu) which is used to analyze analytical ultracentrifugation experiments by high-resolution methods. Users can request an individual database instance...

Metaproteomics Gateway

26 Jun 2024 | Science Gateways

Galaxy-P platform offers an open source, bioinformatics platform for disseminating metaproteomics software and workflows. This was a result of metaproteomics contribution-fest (z.umn.edu/mphack2016) which generated easily accessible and documented metaproteomic software tools and workflows. The...

Microbial Genomes Atlas

26 Jun 2024 | Science Gateways

The Microbial Genomes Atlas –MiGA– processes Prokaryotic genomes (draft or complete), applies different quality checks, and identifies the closest relatives in public databases using a combination of genome-wide identity metrics such as the average nucleotide identity (ANI) and the...

Open Knowledge of Interatomic Models

26 Jun 2024 | Science Gateways

The Open Knowledgebase of Interatomic Models (OpenKIM) is an interatomic potential repository and an online framework for making molecular simulations reliable, reproducible, and portable. Computer implementations of interatomic models are archived in OpenKIM, verified for coding integrity, and...

Plasma Science Virtual Laboratory

26 Jun 2024 | Science Gateways

The Plasma Science Virtual Laboratory (VLab) is the gateway that drives the Gkeyll workflow executions on a wide range of HPC systems. The VLab is deployed with hosted gateway platform SciGaP, using Apache Airavata middleware as the underlying middleware that provides gateways. Gkeyll is a...

Proteogenomics Gateway

26 Jun 2024 | Science Gateways

This page provides links to instructional materials describing how to access and use the proteogenomic workflows described in the manuscript text. Please access the links indicated below for the following materials: Training on usegalaxyp.org How to access and use the usegalaxyp.org training...

Providing a Neuroscience Gateway

26 Jun 2024 | Science Gateways

The Neuroscience Gateway (NSG) is an open project funded by the National Science Foundation and developed by researchers from UCSD and Yale University. The NSG (www.nsgportal.org) is a software infrastructure that allows computational neuroscience researchers and students to easily utilize HPC...

Searching the SRA

26 Jun 2024 | Science Gateways

Searching the SRA provides a gateway for researchers to explore sequence data from publicly available metagenomics projects in the Sequence Read Archive, You can upload a DNA or protein query sequence, and quickly scan for the presence of that sequence in over 100,000 freely available datasets...

Snow Vision

26 Jun 2024 | Science Gateways

Our team of archaeologists, computer scientists, and digital humanists unites outstanding problems in art and archaeology and cutting-edge computer-vision research – an example of digital humanities par excellence – to automate the matching of stamped pottery sherds in order to...

Visualizing Statistical Concepts: A collection of tools for emerging music education researchers

26 Jun 2024 | Science Gateways

"I created a virtual machine with the statistical program R installed. R is a free, open-source statistical computing and graphics language and is a flexible platform for organizing, visualizing, and analyzing data. The web applications accessible from the page were built with an...

Apache Airvata Testdrive Gateway

24 Jun 2024 | Science Gateways

The Airavata Django Portal is a web interface to the Apache Airavata API implemented using the Django web framework. The intention is that the Airavata Django Portal can be used as is for a full featured web based science gateway but it can also be customized through various plugins...

SoyBase

09 May 2024 | Science Gateways

SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...

Medicago truncatula genome database

09 May 2024 | Science Gateways

Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...

Network for Computational Nanotechnology and nanoHUB

09 May 2024 | Science Gateways

The Network for Computational Nanotechnology (NCN) has a mission to connect theory, experiment, and computation in a way that will transform nanoscience into nanotechnology. While addressing challenges in the field, NCN researchers produce new algorithms, approaches,...

Chem Compute

09 May 2024 | Science Gateways

The Chem Compute website allows students to easily access state of the art computational software for free. Our hope is that this will enable faculty to incorporate computational chemistry into their undergraduate teaching and research curriculum without the hassle...

GenePattern

09 May 2024 | Science Gateways

GenePattern is a powerful genomic analysis platform that provides access to hundreds of tools for gene expression analysis, proteomics, SNP analysis, flow cytometry, RNA-seq analysis, and common data processing tasks. A web-based interface provides easy access to...

MicroScope

09 May 2024 | Science Gateways

MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.

Reactome

09 May 2024 | Science Gateways

REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...