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  1. Clowder

    09 May 2024

    Clowder is a research data management system designed to support any data format and multiple research domains. The core software has been in development for the past five years with funding from a variety of sources. Clowder is open source software and we are always...

  2. MDAnalysis

    09 May 2024

    MDAnalysis is an object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, Amber or DL_POLY; it also reads other formats (e.g. PDB files and XYZ format trajectories; see the supported coordinate formats for...

  3. Brown Dog

    09 May 2024

    Brown Dog's goal is to prototype a highly distributed and extensible science driven Data Transformation Service (DTS). As a component of a national research cyberinfrastructure Brown Dog aims at making past and present research data more accessible and more useful to...

  4. Drupal

    09 May 2024

    Drupal is content management software. It's used to make many of the websites and applications you use every day. Drupal has great standard features, like easy content authoring, reliable performance, and excellent security. But what sets it apart is its flexibility;...

  5. ERGO

    09 May 2024

    Ergo, previously MAEviz, is an open-source project that helps reduce the time from discovery gap that exists between researchers, practitioners, and decision makers by integrating the latest research findings, most accurate data, and new methodologies into a single...

  6. Trellis

    09 May 2024

    Trellis is an interactive web-based application for argumentation and decision-making. Using Trellis, users can come to individual and collaborative conclusions on virtually any topic, from scientific discourse to political and policy views to deciding which product...

  7. Zenodo

    09 May 2024

    As CERN service, it is supported by European Commission, and powered by Invenio, digital repositories. It is a free and open-source software for the long-tail of science, enabling researchers to share and preserve any research outputs in any size, any format and from...

  8. WINGS

    09 May 2024

    WINGS is a semantic workflow system that assists scientists with the design of computational experiments. A computational experiment specifies how selected datasets are to be processed by a series of software components in a particular configuration. Earth scientists...

  9. INTERACTIVE PARALLELIZATION TOOL (IPT)

    09 May 2024

    Interactive Parallelization Tool (IPT) assists domain-­experts and students in efficiently parallelizing their existing C/C++ applications using any of the following parallel programming models: Message Passing Interface (MPI), OpenMP, CUDA, and hybrid programming....

  10. SLATE and the Mobility of Capability

    09 May 2024

    SLATE (Services Layer at the Edge) is a new project that, when complete, will implement “cyberinfrastructure as code” by augmenting the canonical Science DMZ pattern with a generic, programmable, secure and trusted underlayment platform.

  11. 3DEM (3-D ELECTRON MICROSCOPY)

    09 May 2024

    A web-based research platform focused on developing and disseminating new technologies for enhanced resolution 3-dimensional electron microscopy.

  12. Chem Compute

    09 May 2024 | Science Gateways

    The Chem Compute website allows students to easily access state of the art computational software for free. Our hope is that this will enable faculty to incorporate computational chemistry into their undergraduate teaching and research curriculum without the hassle...

  13. Open OnDemand

    09 May 2024 | Science Gateways

    Open OnDemand is an NSF-funded open-source HPC portal based on OSC’s original OnDemand portal. The goal of Open OnDemand is to provide an easy way for system administrators to provide web access to their HPC resources, including, but not limited to: ...

  14. Open OnDemand

    09 May 2024 | Science Gateways

    Open OnDemand is an NSF-funded open-source HPC portal based on OSC’s original OnDemand portal. The goal of Open OnDemand is to provide an easy way for system administrators to provide web access to their HPC resources, including, but not limited to: ...

  15. Materials Data Curation System

    09 May 2024 | Science Gateways

    The NIST Materials Data Curation System (MDCS) provides a means for capturing, sharing, and transforming materials data into a structured format that is XML based amenable to transformation to other formats. The data are organized using user-selected templates...

  16. MetaboLights

    09 May 2024 | Science Gateways

    MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and...

  17. BUSCO

    09 May 2024 | Science Gateways

    BUSCO v3 provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.

  18. PHYLOViZ

    09 May 2024 | Science Gateways

    PHYLOViZ is a platform independent JAVA software that allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data.

  19. Galaxy Software Framework

    09 May 2024 | Science Gateways

    Galaxy software framework is an open-source application. Its goal is to develop and maintain a system that enables researchers without informatics expertise to perform computational analyses through the web. A user interacts with Galaxy through the web by uploading...

  20. Galaxy Software Framework

    09 May 2024 | Science Gateways

    Galaxy software framework is an open-source application. Its goal is to develop and maintain a system that enables researchers without informatics expertise to perform computational analyses through the web. A user interacts with Galaxy through the web by uploading...

  21. MP-Complete

    09 May 2024 | Science Gateways

    The MP-Complete science gateway is a user-friendly, accessible platforms for researchers to perform first principles calculations on novel and existing materials. A key feature is its tight integration with the Materials Project (www.materialsproject.org), an open...

  22. GISandbox

    09 May 2024 | Science Gateways

    GISandbox is a play place for researchers and educators to learn about, experiment with, and advance geographic information systems and science (GIS). GISandbox blends GIS and computing, which encompasses spatial analysis and modeling, agent-based models, as well as...

  23. CyVerse

    09 May 2024 | Science Gateways

    CyVerse fills a niche created by the computing epoch and a rapidly evolving world. Developing solutions to today’s grand scientific challenges means that we must understand how the organisms that contribute to our food, fuels, and ecosystem are shaped by interactions...

  24. Manylabs

    09 May 2024 | Science Gateways

    Manylabs is a community hacker space or open science and Education. We hold public events and provide a residency program for people working on their own projects

  25. Center for Applied Internet Data Analysis (CAIDA)

    09 May 2024 | Science Gateways

    The Center for Applied Internet Data Analysis (CAIDA) conducts network research and builds research infrastructure to support large-scale data collection, curation, and data distribution to the scientific research community. The group, located at the federally funded...