Cyclus

09 May 2024

Cyclus is the next-generation agent-based nuclear fuel cycle simulator, providing flexibility to users and developers through a dynamic resource exchange solver and plug-in, user-developed agent framework. The goal of Cyclus is to enable a broad spectrum of fuel...

Bgee

09 May 2024

Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy,...

Cloud-Hosted Real-time Data Services for the Geosciences (CHORDS)

09 May 2024

Cloud-Hosted Real-time Data Services for the Geosciences (CHORDS) is a real-time data services infrastructure that will provide an easy-to-use system to acquire, navigate and distribute real-time data streams via cloud services and the Internet. It will lower the...

DipCheck

09 May 2024

DipCheck is a validation tool for the evaluation of protein backbone geometry, developed by Joana Pereira and Victor Lamzin at the EMBL Hamburg. The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of the geometry of a 5-atom dipeptide unit:...

xDCI Data CyberInfrastructure

09 May 2024 | Science Gateways

xDCI is an acronym for cross-disciplinary data cyberinfrastructure. xDCI is positioned as a completely customizable solution for scientific communities that simplifies the process of creating and using cyberinfrastructure to support data science.

ADCIRC

09 May 2024 | Science Gateways

ADCIRC is a system of computer programs for solving time dependent, free surface circulation and transport problems in two and three dimensions. These programs utilize the finite element method in space allowing the use of highly flexible, unstructured grids. Typical...

eBird

09 May 2024 | Science Gateways

eBird began with a simple idea—that every birdwatcher has unique knowledge and experience. Our goal is to gather this information in the form of checklists of birds, archive it, and freely share it to power new data-driven approaches to science, conservation and...

EcologyPlus

09 May 2024 | Science Gateways

Our Mission: EcologyPlus connects diverse college students and early career scientists with timely and relevant career opportunities and a community of peers and professionals in ecology and related careers across all sectors.What is EcologyPlus? ...

Panorama 360

09 May 2024 | Science Gateways

The DOE Panorama project has developed an Spallation Neutron Source (SNS) workflow to confirm that nanodiamonds enhance the dynamics of tRNA in presence of water. The workflow, enacted by the Pegasus Workflow Management System, calculates the epsilon that best...

KnowEnG

09 May 2024 | Science Gateways

KnowEnG, The Knowledge Engine for Genomics, will transform the way biomedical researchers analyze their genome-wide data by integrating multiple analytical methods derived from the most advanced data mining and machine learning research. Embedded with the breadth of...

Terra: the EOS Flagship

09 May 2024 | Science Gateways

Terra explores the connections between Earth's atmosphere, land, snow and ice, ocean, and energy balance to understand Earth's climate and climate change and to map the impact of human activity and natural disasters on communities and ecosystems.

Amber

09 May 2024 | Science Gateways

Amber is a suite of biomolecular simulation programs. The term "Amber" refers to two things. First, it is a set of molecular mechanical force fields for the simulation of biomolecules (these force fields are in the public domain, and are used in a variety of...

Materials Data Facility (MDF)

09 May 2024 | Science Gateways

The Materials Data Facility (MDF) is set of data services built specifically to support materials science researchers. MDF consists of two synergistic services, data publication and data discovery (in development). The production-ready data publication service offers...

Clowder

09 May 2024 | Science Gateways

Clowder is a research data management system designed to support any data format and multiple research domains. The core software has been in development for the past five years with funding from a variety of sources. Clowder is open source software and we are always...

MDAnalysis

09 May 2024 | Science Gateways

MDAnalysis is an object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, Amber or DL_POLY; it also reads other formats (e.g. PDB files and XYZ format trajectories; see the supported coordinate formats for...

Brown Dog

09 May 2024 | Science Gateways

Brown Dog's goal is to prototype a highly distributed and extensible science driven Data Transformation Service (DTS). As a component of a national research cyberinfrastructure Brown Dog aims at making past and present research data more accessible and more useful to...

PRODIGY (PROtein binDIng enerGY prediction)

09 May 2024 | Science Gateways

PRODIGY (PROtein binDIng enerGY prediction) is a collection of web services focused on the prediction of binding affinity in biological complexes as well as the identification of biological interfaces from crystallographic one.

QuaFit

09 May 2024 | Science Gateways

QUAFIT is a novel method for the quaternary structure determination from small-angle x-ray and neutron scattering data. QUAFIT is based on the idea that asymmetric monomers, formed by rigid domains of known atomic structure possibly connected by flexible linkers of...

PHI-base

09 May 2024 | Science Gateways

iPHI-base is a web-accessible database that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is therefore an invaluable resource...

ITSoneDB

09 May 2024 | Science Gateways

ITSoneDB is a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences. It is aimed at supporting metabarcoding surveys of fungal and other microbial eukaryotic environmental communities. The sequences were extracted from...

PARTHENOS

09 May 2024 | Science Gateways

PARTHENOS is a H2020 EU Project (Pooling Activities, Resources and Tools for Heritage E-research Networking, Optimization and Synergies). This gateway supports the project strengthening the cohesion of research in the broad sector of Linguistic Studies, Humanities,...

Midwest Big Data Hub

09 May 2024 | Science Gateways

A diverse and committed network of partners has created a nimble and flexible regional Midwest Big Data Hub (MBDH) to address increasing challenges in collecting, managing, serving, mining, and analyzing rapidly growing and increasingly complex data and information...

Drupal

09 May 2024 | Science Gateways

Drupal is content management software. It's used to make many of the websites and applications you use every day. Drupal has great standard features, like easy content authoring, reliable performance, and excellent security. But what sets it apart is its flexibility;...

Dolbico

09 May 2024 | Science Gateways

A database for local biomolecular conformers

Jalview

09 May 2024 | Science Gateways

Jalview is a free program for multiple sequence alignment editing, visualisation and analysis. Use it to view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and...