rPredictorDB is a predictive database of secondary structures of individual RNAs and their formatted plots. The structures are generated by template-based prediction of RNA secondary structure with experimentally identified structures as templates. RNAs with large secondary structure are visualized using a template-based visualization method allowing for their formatted, clear and readable display. The web also allows for secondary structure template-based prediction for user-uploaded RNA sequences using templates stored in rPredictorDB.

Pánek J, Modrák M, Schwarz M: An Algorithm for Template-Based Prediction of Secondary Structures of Individual RNA Sequences. Front Genet, 8, 147. doi:10.3389/fgene.2017.00147 Elias R, Hoksza D: TRAVeLer: a tool for template-based RNA secondary structure visualization. BMC Bioinformatics. 2017 Nov 15;18(1):487. doi:10.1186/s12859-017-1885-4

http://rpredictor.ms.mff.cuni.cz/contact

http://rpredictor.ms.mff.cuni.cz/search

Documentation: http://rpredictor.ms.mff.cuni.cz/documentation/

cp-predict: https://github.com/handrbaal/cppredict/
database dump: http://rpredictor.ms.mff.cuni.cz/downloads/db_dump.zip

zweidner

Researchers should cite this work as follows:

• (2024), "rPredictorDB," https://sciencegateways.org/resources/rpredictordb.

  BibTex | EndNote