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MIGA@XSEDE

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Category

Science Gateways

Published on

Abstract

MiGA@XSEDE is the latest extension of the Microbial Genome Atlas (MiGA). MiGA is designed to be the genome-equivalent of projects like the Ribosomal Database Project (RDP) and SILVA. In addition to serving as a repository, MiGA provides data and tools to classify and catalog microbial genomes and perform gene diversity analysis against publicly available reference genomes. MiGA@XSEDE super-charges the functionality of MiGA through the use of an XSEDE Supercomputer. MIGA@ XSEDE has additional computing capabilities: A much larger input size, the possibility of calculating all-vs-all distances and indexing entire databases, and batch upload/download. This is meant for more automated, high-through processing of data.

Email

Luis M. Rodriguez-R: https://rodriguez-r.com/

Site

https://xsede.microbial-genomes.org/

Software

MIGA Codebase: https://github.com/bio-miga/miga-web
MIGA Gateway Portal Codebase: https://github.com/apache/airavata-django-portal
Apache Airavata Codebase: https://github.com/apache/airavata

Users

eabeysin

Cite this work

Researchers should cite this work as follows:

  • (2024), "MIGA@XSEDE," https://sciencegateways.org/resources/migaxsede.

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