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MIGA@XSEDE

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Abstract

MiGA@XSEDE is the latest extension of the Microbial Genome Atlas (MiGA). MiGA is designed to be the genome-equivalent of projects like the Ribosomal Database Project (RDP) and SILVA. In addition to serving as a repository, MiGA provides data and tools to classify and catalog microbial genomes and perform gene diversity analysis against publicly available reference genomes. MiGA@XSEDE super-charges the functionality of MiGA through the use of an XSEDE Supercomputer. MIGA@ XSEDE has additional computing capabilities: A much larger input size, the possibility of calculating all-vs-all distances and indexing entire databases, and batch upload/download. This is meant for more automated, high-through processing of data.

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Luis M. Rodriguez-R: https://rodriguez-r.com/

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Cite this work

Researchers should cite this work as follows:

  • (2020), "MIGA@XSEDE," https://sciencegateways.org/resources/migaxsede.

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