Trinity CTAT Galaxy
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Abstract
The Trinity Cancer Transcriptome Analysis Toolkit (CTAT) aims to provide tools for leveraging RNA-Seq to gain insights into the biology of cancer transcriptomes. Bioinformatics tool support is provided for mutation detection, fusion transcript identification, de novo transcript assembly of cancer-specific transcripts, lncRNA classification, and foreign transcript detection (viruses, microbes). CTAT is funded by the National Cancer Institute Informatics Technology for Cancer Research (NCI ITCR) program. Software tools and pipelines developed as components of Trinity CTAT are described below with links to the corresponding open source software, documentation, and tutorials.
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