MetaNetX is a repository of genome-scale metabolic networks (GSMNs) and biochemical pathways from a number of major resources imported into a common namespace of chemical compounds, reactions, cellular compartments - namely MNXref - and proteins. The MetaNetX.org website (http://www.metanetx.org/) provides access to these integrated data as well as a variety of tools that allow users to import their own GSMNs, map them to the MNXref reconciliation, and manipulate, compare, analyze, simulate (using flux balance analysis) and export the resulting GSMNs. MNXref and MetaNetX are regularly updated and freely available.

SPARQL endpoint: https://rdf.metanetx.org/

MetaNetX/MNXref: unified namespace for metabolites and biochemical
reactions in the context of metabolic models
Sébastien Moretti, Van Du T Tran, Florence Mehl, Mark Ibberson, Marco Pagni
Nucleic Acids Research (2021), 49(D1):D570-D574

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https://www.metanetx.org/

Getting Started: https://www.metanetx.org/mnxdoc/help.html

SPARQL endpoint: https://rdf.metanetx.org/

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Researchers should cite this work as follows:

• (2024), "MetaNetX," https://sciencegateways.org/resources/metanetx.

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