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  1. SoyBase

    09 May 2024

    SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...

  2. Chemical Entities of Biological Interest (ChEBI)

    09 May 2024

    Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. The term ‘molecular entity’ refers to any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical,...

  3. DSpace - open digital repository

    09 May 2024

    DSpace is the software of choice for academic, non-profit, and commercial organizations building open digital repositories. It preserves and enables easy and open access to all types of digital content including text, images, moving images, mpegs and data sets. ...

  4. Terra: the EOS Flagship

    09 May 2024

    Terra explores the connections between Earth's atmosphere, land, snow and ice, ocean, and energy balance to understand Earth's climate and climate change and to map the impact of human activity and natural disasters on communities and ecosystems.

  5. PRODIGY (PROtein binDIng enerGY prediction)

    09 May 2024

    PRODIGY (PROtein binDIng enerGY prediction) is a collection of web services focused on the prediction of binding affinity in biological complexes as well as the identification of biological interfaces from crystallographic one.

  6. WINGS

    09 May 2024

    WINGS is a semantic workflow system that assists scientists with the design of computational experiments. A computational experiment specifies how selected datasets are to be processed by a series of software components in a particular configuration. Earth scientists...

  7. Medicago truncatula genome database

    09 May 2024

    Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...

  8. sRNA Plant Portal

    09 May 2024

    The plant sRNA portal is an online resource integrating a workflow for identifying, predicting and annotating plant small RNAs (sRNA), and a database to store sRNA datasets with standardized metadata. The workflow (miRPursuit) is based on publicly available tools and...

  9. Citizen Science Alliance

    09 May 2024

    The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...

  10. MicroScope

    09 May 2024 | Science Gateways

    MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.

  11. Reactome

    09 May 2024 | Science Gateways

    REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...

  12. OMA

    09 May 2024 | Science Gateways

    The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.

  13. Mozilla Science Lab

    09 May 2024 | Science Gateways

    The Mozilla Science Lab is an initiative of the Mozilla Foundation exploring how the power of open source can change the way science is done on the web. We believe a community of peers that work, learn and build together can make research thrive on the open web. We...

  14. Earth Science Information Partners (ESIP)

    09 May 2024 | Science Gateways

    The Federation of Earth Science Information Partners (ESIP) is an open, networked community that brings together science, data and information technology practitioners. Participation in ESIP is beneficial because it provides an intellectual commons to expose, gather...

  15. Citizen Science Alliance

    09 May 2024 | Science Gateways

    The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...

  16. EarthCube

    09 May 2024 | Science Gateways

    EarthCube was initiated by the National Science Foundation (NSF) in 2011 to transform geoscience research by developing cyberinfrastructure to improve access, sharing, visualization, and analysis of all forms of geosciences data and related resources. As a...

  17. CyVerse

    09 May 2024 | Science Gateways

    CyVerse fills a niche created by the computing epoch and a rapidly evolving world. Developing solutions to today’s grand scientific challenges means that we must understand how the organisms that contribute to our food, fuels, and ecosystem are shaped by interactions...

  18. VRE4EIC

    09 May 2024 | Science Gateways

    The VRE4EIC project addresses key data and software challenges in supporting multidisciplinary data driven sciences

  19. DataOne

    09 May 2024 | Science Gateways

    DataONE is a community driven project providing access to data across multiple member repositories, supporting enhanced search and discovery of Earth and environmental data. DataONE promotes best practices in data management through responsive educational resources...

  20. HRGRN

    09 May 2024 | Science Gateways

    We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...

  21. Diagrid

    09 May 2024 | Science Gateways

    Allows science software to be run through a web browser

  22. The Earth System Grid (ESG)

    09 May 2024 | Science Gateways

    The Earth System Grid (ESG) a DOE SciDAC sponsored project, provides access to data, models, and tools for the global climate change research community. The Earth System Grid (ESG) a DOE SciDAC sponsored project, provides access to data, models, and tools for the...

  23. The Triticeae Toolbox (T3)

    09 May 2024 | Science Gateways

    T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data...

  24. VEP

    09 May 2024 | Science Gateways

    VEP (Variant Effect Predictor) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

  25. Vega

    09 May 2024 | Science Gateways

    Vega is a repository for high-quality gene models produced by the manual annotation of vertebrate genomes.