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INCA: Monitoring Tool
09 May 2024
Determining whether a Grid is up in the face of complex Grid software deployments can be difficult and depends on the types of applications and users that utilize it. By detailing a set of software, services, and features that should be available on a Grid in a...
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Pegasus
09 May 2024
The Pegasus project encompasses a set of technologies that help workflow-based applications execute in a number of different environments including desktops, campus clusters, grids, and clouds. Pegasus bridges the scientific domain and the execution environment by...
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SoyBase
09 May 2024
SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...
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Chemical Entities of Biological Interest (ChEBI)
09 May 2024
Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. The term ‘molecular entity’ refers to any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical,...
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DSpace - open digital repository
09 May 2024
DSpace is the software of choice for academic, non-profit, and commercial organizations building open digital repositories. It preserves and enables easy and open access to all types of digital content including text, images, moving images, mpegs and data sets. ...
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GenApp
09 May 2024
GenApp is a tool that can help people with existing code generate stand alone applications and science gateways. GenApp gateway generation is based upon definition files. User supplied code is brought into GenApp by writing a definition file and modifying or wrapping...
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Terra: the EOS Flagship
09 May 2024
Terra explores the connections between Earth's atmosphere, land, snow and ice, ocean, and energy balance to understand Earth's climate and climate change and to map the impact of human activity and natural disasters on communities and ecosystems.
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PRODIGY (PROtein binDIng enerGY prediction)
09 May 2024
PRODIGY (PROtein binDIng enerGY prediction) is a collection of web services focused on the prediction of binding affinity in biological complexes as well as the identification of biological interfaces from crystallographic one.
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WINGS
09 May 2024
WINGS is a semantic workflow system that assists scientists with the design of computational experiments. A computational experiment specifies how selected datasets are to be processed by a series of software components in a particular configuration. Earth scientists...
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Medicago truncatula genome database
09 May 2024
Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...
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Open OnDemand
09 May 2024
Open OnDemand is an NSF-funded open-source HPC portal based on OSC’s original OnDemand portal. The goal of Open OnDemand is to provide an easy way for system administrators to provide web access to their HPC resources, including, but not limited to: ...
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sRNA Plant Portal
09 May 2024
The plant sRNA portal is an online resource integrating a workflow for identifying, predicting and annotating plant small RNAs (sRNA), and a database to store sRNA datasets with standardized metadata. The workflow (miRPursuit) is based on publicly available tools and...
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Citizen Science Alliance
09 May 2024
The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...
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MicroScope
09 May 2024 | Science Gateways
MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.
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Reactome
09 May 2024 | Science Gateways
REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...
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OMA
09 May 2024 | Science Gateways
The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.
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Galaxy Software Framework
09 May 2024 | Science Gateways
Galaxy software framework is an open-source application. Its goal is to develop and maintain a system that enables researchers without informatics expertise to perform computational analyses through the web. A user interacts with Galaxy through the web by uploading...
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Mozilla Science Lab
09 May 2024 | Science Gateways
The Mozilla Science Lab is an initiative of the Mozilla Foundation exploring how the power of open source can change the way science is done on the web. We believe a community of peers that work, learn and build together can make research thrive on the open web. We...
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Earth Science Information Partners (ESIP)
09 May 2024 | Science Gateways
The Federation of Earth Science Information Partners (ESIP) is an open, networked community that brings together science, data and information technology practitioners. Participation in ESIP is beneficial because it provides an intellectual commons to expose, gather...
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Citizen Science Alliance
09 May 2024 | Science Gateways
The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...
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EarthCube
09 May 2024 | Science Gateways
EarthCube was initiated by the National Science Foundation (NSF) in 2011 to transform geoscience research by developing cyberinfrastructure to improve access, sharing, visualization, and analysis of all forms of geosciences data and related resources. As a...
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CyVerse
09 May 2024 | Science Gateways
CyVerse fills a niche created by the computing epoch and a rapidly evolving world. Developing solutions to today’s grand scientific challenges means that we must understand how the organisms that contribute to our food, fuels, and ecosystem are shaped by interactions...
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VRE4EIC
09 May 2024 | Science Gateways
The VRE4EIC project addresses key data and software challenges in supporting multidisciplinary data driven sciences
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DataOne
09 May 2024 | Science Gateways
DataONE is a community driven project providing access to data across multiple member repositories, supporting enhanced search and discovery of Earth and environmental data. DataONE promotes best practices in data management through responsive educational resources...
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HRGRN
09 May 2024 | Science Gateways
We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...