SoyBase

09 May 2024

SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...

Chemical Entities of Biological Interest (ChEBI)

09 May 2024

Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. The term ‘molecular entity’ refers to any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical,...

DSpace - open digital repository

09 May 2024

DSpace is the software of choice for academic, non-profit, and commercial organizations building open digital repositories. It preserves and enables easy and open access to all types of digital content including text, images, moving images, mpegs and data sets. ...

PRODIGY (PROtein binDIng enerGY prediction)

09 May 2024

PRODIGY (PROtein binDIng enerGY prediction) is a collection of web services focused on the prediction of binding affinity in biological complexes as well as the identification of biological interfaces from crystallographic one.

WINGS

09 May 2024

WINGS is a semantic workflow system that assists scientists with the design of computational experiments. A computational experiment specifies how selected datasets are to be processed by a series of software components in a particular configuration. Earth scientists...

Medicago truncatula genome database

09 May 2024

Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...

sRNA Plant Portal

09 May 2024

The plant sRNA portal is an online resource integrating a workflow for identifying, predicting and annotating plant small RNAs (sRNA), and a database to store sRNA datasets with standardized metadata. The workflow (miRPursuit) is based on publicly available tools and...

Citizen Science Alliance

09 May 2024

The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...

MicroScope

09 May 2024 | Science Gateways

MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.

Reactome

09 May 2024 | Science Gateways

REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...

OMA

09 May 2024 | Science Gateways

The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.

Mozilla Science Lab

09 May 2024 | Science Gateways

The Mozilla Science Lab is an initiative of the Mozilla Foundation exploring how the power of open source can change the way science is done on the web. We believe a community of peers that work, learn and build together can make research thrive on the open web. We...

Citizen Science Alliance

09 May 2024 | Science Gateways

The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...

CyVerse

09 May 2024 | Science Gateways

CyVerse fills a niche created by the computing epoch and a rapidly evolving world. Developing solutions to today’s grand scientific challenges means that we must understand how the organisms that contribute to our food, fuels, and ecosystem are shaped by interactions...

VRE4EIC

09 May 2024 | Science Gateways

The VRE4EIC project addresses key data and software challenges in supporting multidisciplinary data driven sciences

HRGRN

09 May 2024 | Science Gateways

We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...

Diagrid

09 May 2024 | Science Gateways

Allows science software to be run through a web browser

The Triticeae Toolbox (T3)

09 May 2024 | Science Gateways

T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data...

VEP

09 May 2024 | Science Gateways

VEP (Variant Effect Predictor) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

Vega

09 May 2024 | Science Gateways

Vega is a repository for high-quality gene models produced by the manual annotation of vertebrate genomes.

Coherent X-ray Imaging Data Bank (CXIDB)

09 May 2024 | Science Gateways

Nowadays there are several groups around the world doing excellent work using different kinds of techniques all based on the physics of coherent X-ray imaging (CXI). Due to several reasons, including lack of a standard file format, there has been limited sharing of...

NCBI Genome Workbench

09 May 2024 | Science Gateways

Genome Workbench offers researchers a rich set of integrated tools for studying and analyzing genetic data. Users can explore and compare data from multiple sources including the NCBI databases or the user’s own private data. Data analysis in Genome Workbench is...

CottonGen

09 May 2024 | Science Gateways

CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.

PHARMACOLOGY

09 May 2024 | Science Gateways

One of the main aims is to provide a searchable database with quantitative information on drug targets and the prescription medicines and experimental drugs that act on them. The information in the database is presented at two levels: the initial view or landing...

ORCA (Open Resource Control Architecture)

09 May 2024 | Science Gateways

ORCA is a software framework and open-source platform for managing a programmatically controllable shared substrate, which may contain any combination of servers, storage, networks, or other components. This class of systems is often called cloud computing or utility...