Robetta provides both ab initio and comparative models of protein domains. Domains without a detectable PDB homolog are modeled with the Rosetta de novo protocol (Simons et al. (1997) J Mol Biol. 268:209-225, Bradley et al. (2005) Science 309 (5742), 1868-71). Comparative models are built from template PDBs detected and aligned using locally installed versions of HHSEARCH/HHpred, RaptorX, and Sparks-X. Alignments are clustered and comparative models are generated using the RosettaCM protocol. The procedure is fully automated.

Researchers should cite this work as follows:

• (2024), "ROBETTA - Full-chain Protein Structure Prediction Server," https://sciencegateways.org/resources/robetta-full-chainproteinstructurepredictionserver.

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1. BOINC
2. protein domains
3. Robetta
4. Software
5. structure prediction