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Tags: database

All Categories (1-25 of 28)

  1. BIGNASim

    11 Sep 2019

    BIGNASim, a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.

  2. maizeGDB

    11 Sep 2019

    MaizeGDB (maize genetics and genomics database) is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.

  3. PLEXdb

    11 Sep 2019

    PLEXdb (Plant Expression Database) is a unified gene expression resource for plants and plant pathogens. PLEXdb is a genotype to phenotype, hypothesis building information warehouse, leveraging highly parallel expression data with seamless portals to related genetic,...

  4. InterRidge Vents Database

    11 Sep 2019

    InterRidge Vents Database is to provide a comprehensive list of active submarine hydrothermal vent fields for use in academic research and education.

  5. Molecular Space

    11 Sep 2019

    The Clean Energy Project (CEP) is a virtual high-throughput discovery and design effort for the next generation of plastic solar cell materials. We study millions of candidate structures to identify suitable compounds for the harvesting of renewable energy from the...

  6. European Variation Archive (EVA)

    11 Sep 2019

    The European Variation Archive (EVA) is an open-access database of all types of genetic variation data from all species.

  7. The Triticeae Toolbox (T3)

    11 Sep 2019

    T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data...

  8. PHARMACOLOGY

    11 Sep 2019

    One of the main aims is to provide a searchable database with quantitative information on drug targets and the prescription medicines and experimental drugs that act on them. The information in the database is presented at two levels: the initial view or landing...

  9. Benchmark Energy & Geometry Database (BEGDB)

    11 Sep 2019

    The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate QM calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.

  10. MetalPDB

    11 Sep 2019

    MetalPDB collects and allows easy access to the knowledge on metal sites in biological macromolecules, starting from the structural information contained in the Protein Data Bank (PDB).

  11. SwissRegulon Portal

    11 Sep 2019

    A repository of computational biology tools and databases developed by the van Nimwegen lab

  12. Neotoma Paleoecology Database

    11 Sep 2019

    Neotoma Paleoecology Database and Community is an online hub for data, research, education, and discussion about paleoenvironments. Anyone with an Internet connection can access Neotoma.

  13. Paleobiology Database (PBDB)

    11 Sep 2019

    The Paleobiology Database is a public database of paleontological data that anyone can use, maintained by an international non-governmental group of paleontologists. You can explore the data online in the Navigator, which lets you filter fossil occurrences by time,...

  14. ODM2(Observations Data Model 2)

    11 Sep 2019

    ODM2 is an information model and supporting software ecosystem for feature-based earth observations, designed to facilitate interoperability across scientific disciplines and domain cyberinfrastructures. For example, a single ODM2 database can readily integrate...

  15. BioFragment Database (BFDb)

    11 Sep 2019

    The BioFragment Database (BFDb) is an open-data platform for computational chemistry analysis of noncovalent interactions and collects >3000 bifragment contacts directly from biological systems.

  16. DipCheck

    11 Sep 2019

    DipCheck is a validation tool for the evaluation of protein backbone geometry, developed by Joana Pereira and Victor Lamzin at the EMBL Hamburg. The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of the geometry of a 5-atom dipeptide unit:...

  17. MetaboLights

    09 Apr 2019

    MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and...

  18. BRENDA

    09 Apr 2019

    BRENDA is the main collection of enzyme functional data available to the scientific community.

  19. CAZY

    09 Apr 2019

    The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

  20. IntAct Molecular Interaction Database

    09 Apr 2019

    IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.

  21. IntEnz

    09 Apr 2019

    IntEnz (Integrated relational Enzyme database) is a freely available resource focused on enzyme nomenclature. IntEnz is created in collaboration with the Swiss Institute of Bioinformatics (SIB). This collaboration is responsible for the production of the ENZYME...

  22. MicroScope

    09 Apr 2019

    MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.

  23. Reactome

    09 Apr 2019

    REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...

  24. Rhea

    09 Apr 2019

    Rhea is an expert curated resource of biochemical reactions designed for the annotation of enzymes and genome-scale metabolic networks and models.

  25. UniProt

    09 Apr 2019

    The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information.