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DipCheck

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Abstract

DipCheck is a validation tool for the evaluation of protein backbone geometry, developed by Joana Pereira and Victor Lamzin at the EMBL Hamburg. The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of the geometry of a 5-atom dipeptide unit: CAi-1-Oi-1-CAi-Oi-CAi+1. The DipSpace database contains 1,024,000 data points derived from well-refined structures deposited in the PDB.

Citation

Pereira J, Lamzin VS. A distance geometry-based description and validation of protein main-chain conformation. IUCrJ (2017) 4, 657-670.

Email

joana.pereira@embl-hamburg.de, victor@embl-hamburg.de

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Cite this work

Researchers should cite this work as follows:

  • (2019), "DipCheck," https://sciencegateways.org/resources/dipcheck.

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