AtlanticWave-Software Defined Exchange (SDX)

09 May 2024

AtlanticWave-Software Defined Exchange (SDX) is a distributed intercontinental experimental SDX, supporting research, experimental deployments, prototyping and interoperability testing, on national and international scales.

The GSuite HyperBrowser

09 May 2024

The GSuite HyperBrowser system includes a range of tools to handle acquisition, processing and analysis of collections of genomic tracks, represented in a simple tabular format, GSuite. Please proceed in either basic or advanced mode. The Genomic...

DataConservancy (DC)

09 May 2024

The Data Conservancy (DC) was launched through a grant from the National Science Foundation’s DataNet program, which built upon prior experience with managing data from the Sloan Digital Sky Survey. The grant provided the DC team an opportunity to broaden its data...

Virtual Imaging Platform

09 May 2024

The Virtual Imaging Platform (VIP) is a web portal for medical simulation and image data analysis. VIP makes applications executable on the web (as a service), and offers an open service to academic researchers worldwide since 2011.

PowerFit

09 May 2024

PowerFit automatically fits high-resolution atomic structures into cryo-EM densities. To this end it performs a full-exhaustive 6-dimensional cross-correlation search between the atomic structure and the density. It takes as input an atomic structure in PDB- or...

PDB-REDO

09 May 2024

PDB-REDO is a procedure to optimise crystallographic structure models, providing algorithms that make a fully automated decision making system for refinement, rebuilding and validation. It combines popular crystallographic software from CCP4, e.g. REFMAC and COOT,...

MetalPDB

09 May 2024

MetalPDB collects and allows easy access to the knowledge on metal sites in biological macromolecules, starting from the structural information contained in the Protein Data Bank (PDB).

iRODS

09 May 2024

The Integrated Rule Oriented Data System, iRODS, is open source data management software designed to manage data sets that are big, important, and complex. Hundreds of organizations worldwide use iRODS to control their records and research data. ...

GEMex

09 May 2024

This gateway is an access point to a Virtual Research Environment (VRE) deployed and operated in the context of GEMex EU-project (Cooperation in Geothermal energy research Europe-Mexico for development of Enhanced Geothermal Systems and Superhot Geothermal Systems)...

EOSC Secretariat

09 May 2024

EOSCsecretariat.eu addresses the need for the set-up of an operational framework supporting the overall governance of the European Open Science Cloud (EOSC). Led by a lean consortium of experienced and complementary partners, the project maintains a practical...

QUBEShub

09 May 2024

To improve learning opportunities for all students enrolled in undergraduate biology courses by reflecting the centrality of quantitative approaches in modern biology.

SISu Project

09 May 2024

The Sequencing Initiative Suomi (SISu) search engine offers a way to search for data on sequence variants in Finns. It provides valuable summary data for researchers and clinicians as well as other people having an interest in genetics in Finland. With...

PatternQuery

09 May 2024

PatternQuery is an interactive, user-friendly, and platform independent web service enabling the user to effectively define, extract, and analyze structural patterns or biomolecular complexes using the PatternQuery language. Such analysis is particularly useful not...

CPORT

09 May 2024

CPORT is an algorithm for the prediction of protein-protein interface residues. It combines six interface prediction methods into a consensus predictor.

SWICZ

09 May 2024

Database of protein expression time series for specific experiments on streptomyces, caulobacter, neiseria.

SwissRegulon Portal

09 May 2024

A repository of computational biology tools and databases developed by the van Nimwegen lab

Cork Oak DB

09 May 2024

A data resource for Quercus suber

ImmPort

09 May 2024

The Immunology Database and Analysis Portal (ImmPort) project provides advanced information technology support in the archiving and exchange of scientific data for the diverse community of life science researchers supported by NIAID/DAIT and serves as a long-term,...

European Nucleotide Archive

09 May 2024

The European Nucleotide Archive (ENA) provides a comprehensive record of the world's nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation. Access to ENA data is provided though the browser, through...

unWISE coadd

09 May 2024

The Wide-Field Infrared Survey Explorer (WISE) satellite observed the full sky in four mid-infrared bands in the 2.8 to 28 μm range. The primary mission was completed in 2010. The WISE team have done a superb job of producing a series of high-quality,...

g:Profiler

09 May 2024

g:Profiler is a bioinformatics toolkit for characterising and manipulating gene lists of high-throughput genomic data.

BIOVIA Pipeline Pilot

09 May 2024

Pipeline Pilot gives you the building blocks to create data science solutions and make them available to be used strategically. Users of any programming level can quickly create custom protocols for a variety of applications, including data processing, data and...

Metadyn View

09 May 2024

MetadynView is a web tool for visualization and analysis of free energy surfaces calculated by metadynamics method, in particular by Plumed package.

IRESite

09 May 2024

The IRESite database presents information about the experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the...

CoGe(Comparative Genomics)

09 May 2024

CoGe is a platform for performing Comparative Genomics research. It provides an open-ended network of interconnected tools to manage, analyze, and visualize next-gen data.