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  1. Wheat Tilling

    11 Sep 2019

    Wheat Target Induced Local Lesions In Genome (TILLING) project based on the tetraploid wheat line Triticum turgidum cv. Kronos. This project entails targeted re-sequencing of the protein coding regions of over 1500 EMS mutagenized individuals from the Kronos...

  2. TreeGenes

    11 Sep 2019

    TreeGenes is a collection of forest tree genome databases and other forest genetic information resources for the international forest genetics community. Dendrome is part of a larger collaborative effort to construct genome databases for major crop and forest...

  3. GenSAS

    11 Sep 2019

    The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and...

  4. BamBam

    11 Sep 2019

    BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...

  5. Genomicus

    11 Sep 2019

    Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in...

  6. Genomics Virtual Laboratory (GVL)

    11 Sep 2019

    The Genomics Virtual Laboratory (GVL) provides a cloud-based suite of genomics analysis tools for research and training.

  7. Genome Database for Rosaceae (GDR)

    11 Sep 2019

    The Genome Database for Rosaceae is a curated and integrated web-based relational database providing data mining tools and publicly available genomics, genetics and breeding data for Rosaceae (almond, apple, blackberry, cherry, peach, pear, plum, raspberry, rose, and...

  8. HRGRN

    11 Sep 2019

    We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...

  9. The Triticeae Toolbox (T3)

    11 Sep 2019

    T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data...

  10. VEP

    11 Sep 2019

    VEP (Variant Effect Predictor) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

  11. Vega

    11 Sep 2019

    Vega is a repository for high-quality gene models produced by the manual annotation of vertebrate genomes.

  12. NCBI Genome Workbench

    11 Sep 2019

    Genome Workbench offers researchers a rich set of integrated tools for studying and analyzing genetic data. Users can explore and compare data from multiple sources including the NCBI databases or the user’s own private data. Data analysis in Genome Workbench is...

  13. CottonGen

    11 Sep 2019

    CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.

  14. Crops in silico

    11 Sep 2019

    Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...

  15. SwissRegulon Portal

    11 Sep 2019

    A repository of computational biology tools and databases developed by the van Nimwegen lab

  16. PeanutBase

    11 Sep 2019

    This web portal is designed to provide convenient access to peanut genetic and genomic data deriving from U.S. and international research, and particularly from the Peanut Genomics Initiative: The U.S. industry has embarked on an ambitious plan to map the peanut...

  17. SoyBase

    11 Sep 2019

    SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...

  18. Medicago truncatula genome database

    11 Sep 2019

    Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...

  19. MicroScope

    09 Apr 2019

    MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.

  20. Reactome

    09 Apr 2019

    REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...

  21. OMA

    09 Apr 2019

    The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.