SwissDrugDesign

09 May 2024

SwissDrugDesign provides a collection of web-based tools covering all aspects of computer-aided drug design.

Data Wolf

09 May 2024

Data Wolf is designed to facilitate the documentation and dissemination of scientific work with a system that makes it easy to create and share workflows while separating the science from the logistics of execution. This allows scientists to focus on research without...

PeanutBase

09 May 2024

This web portal is designed to provide convenient access to peanut genetic and genomic data deriving from U.S. and international research, and particularly from the Peanut Genomics Initiative: The U.S. industry has embarked on an ambitious plan to map the peanut...

CyberGIS Toolkit

09 May 2024

CyberGIS Toolkit is a suite of loosely coupled open-source geospatial software components that provide computationally scalable spatial analysis and modeling capabilities enabled by advanced cyberinfrastructure. CyberGIS Toolkit represents a deep approach to CyberGIS...

Water Quality Portal (WQP)

09 May 2024 | Science Gateways

The Water Quality Portal (WQP) is a cooperative service sponsored by the United States Geological Survey (USGS), the Environmental Protection Agency (EPA) and the National Water Quality Monitoring Council (NWQMC) that integrates publicly available water quality data from the USGS National Water...

Xenon

09 May 2024 | Science Gateways

Xenon is a middleware abstraction library. It provides a simple programming interface to various pieces of software that can be used to access distributed compute and storage resources.

Parsl: A Parallel Scripting Library

09 May 2024 | Science Gateways

Parsl is a parallel scripting library for Python. It provides a model by which complex workflows can be represented in an intuitive Python-based control application. It facilitates transparent parallel execution of workflow components (apps) on any distributed or...

Chipster

09 May 2024 | Science Gateways

Chipster is a user-friendly analysis software for high-throughput data. It contains hundreds of analysis tools for next generation sequencing (NGS), microarray, proteomics and sequence data.

SiteBinder

09 May 2024 | Science Gateways

SiteBinder 2 is a tool for superimposing and analyzing structural fragments in molecules.

The Kepler Project

09 May 2024 | Science Gateways

The Kepler Project is dedicated to furthering and supporting the capabilities, use, and awareness of the free and open source, scientific workflow application, Kepler. Kepler is designed to help scien­tists, analysts, and computer programmers create, execute, and...

Science Gateway Platform as a Service (SciGaP)

09 May 2024 | Science Gateways

The Science Gateways Platform as a service (SciGap) project provides core services for building and hosting science gateways for managing the execution of scientific applications on diverse computing resources, capturing metadata about computational experiments, and...

nanoHUB

09 May 2024 | Science Gateways

nanoHUB.org is the premier gateway for computational nanotechnology research, education, and collaboration. Our site hosts a rapidly growing collection of simulation tools for nanoscale phenomena that run in the cloud and are accessible through a web browser. In...

Cactus Code

09 May 2024 | Science Gateways

Cactus provides computational scientists and engineers with a collaborative, modular and portable programming environment for parallel high performance computing. Cactus can make use of many other technologies for HPC, such as Samrai, HDF5, PETSc and PAPI, and...

Protein Homology/analogY Recognition Engine V 2.0 (PHYRE2)

09 May 2024 | Science Gateways

Phyre2 is a suite of tools available on the web to predict and analyze protein structure, function, and mutations. The focus of Phyre2 is to provide biologists with a simple and intuitive interface to state-of-the-art protein bioinformatics tools.

Data Discovery Studio

09 May 2024 | Science Gateways

Data Discovery Studio indexes over 1.6 million geoscience resources from 40+ academic, government and international scientific data repositories and catalogs. It works across geoscience domains, letting users find the data they need via text-based, spatio-temporal...

Rfam

09 May 2024 | Science Gateways

The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs).

NSGportal

09 May 2024 | Science Gateways

The Neuroscience Gateway (NSG) is an open project funded by the National Science Foundation and developed by researchers from UCSD and Yale University. The NSG (www.nsgportal.org) is a software infrastructure that allows computational neuroscience researchers and...

CATH / Gene3D v4.2

09 May 2024 | Science Gateways

95 million protein domains classified into 6,119 superfamilies. CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common...

Geodashboard

09 May 2024 | Science Gateways

The Geodashboard is geospatial dashboard for geo-temporal data streams.

Protein Crystallisation Construct Designer (ProteinCCD)

09 May 2024 | Science Gateways

The Protein Crystallisation Construct Designer (ProteinCCD) is a tool to help deciding how to choose promising constructs for protein expression and crystallisation. A specific feature of CCD is that since it starts from the DNA sequence, it keeps track of the...

SoBigData

09 May 2024 | Science Gateways

SoBigData is an integrated ecosystem for ethic-sensitive scientific discoveries and advanced applications of social data mining on the various dimensions of social life. The aim of SoBigData is to establish the common vision and methodology at the basis of the...

COINS(Collaborative Informatics Neuroimaging Suite)

09 May 2024 | Science Gateways

COINS(Collaborative Informatics Neuroimaging Suite) is a end-to-end web-based data management system. This tool suite provides an intuitive interface for easy data collection and management as well as rapid sharing among internal and external investigators. It offers...

The Gene Ontology Resource

09 May 2024 | Science Gateways

The Gene Ontology (GO) knowledgebase is the world’s largest source of information on the functions of genes. This knowledge is both human-readable and machine-readable, and is a foundation for computational analysis of large-scale molecular biology and genetics...

ISMARA

09 May 2024 | Science Gateways

ISMARA (Integrated System for Motif Actitivity Response Analysis) is an online tool that models genome-wide expression or ChIP-seq data, in terms of computationally predicted regulatory sites for transcription factors (TFs) and micro-RNAS (miRNAs).

Marine Metagenomics Portal (MMP)

09 May 2024 | Science Gateways

The mission of Marine Metagenomics Portal (MMP) is to provide the marine scientific community with high-quality curated and freely accessible microbial genomics and metagenomics resources.