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EcologyPlus
09 May 2024
Our Mission: EcologyPlus connects diverse college students and early career scientists with timely and relevant career opportunities and a community of peers and professionals in ecology and related careers across all sectors.What is EcologyPlus? ...
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Panorama 360
09 May 2024
The DOE Panorama project has developed an Spallation Neutron Source (SNS) workflow to confirm that nanodiamonds enhance the dynamics of tRNA in presence of water. The workflow, enacted by the Pegasus Workflow Management System, calculates the epsilon that best...
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KnowEnG
09 May 2024
KnowEnG, The Knowledge Engine for Genomics, will transform the way biomedical researchers analyze their genome-wide data by integrating multiple analytical methods derived from the most advanced data mining and machine learning research. Embedded with the breadth of...
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Terra: the EOS Flagship
09 May 2024
Terra explores the connections between Earth's atmosphere, land, snow and ice, ocean, and energy balance to understand Earth's climate and climate change and to map the impact of human activity and natural disasters on communities and ecosystems.
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Amber
09 May 2024
Amber is a suite of biomolecular simulation programs. The term "Amber" refers to two things. First, it is a set of molecular mechanical force fields for the simulation of biomolecules (these force fields are in the public domain, and are used in a variety of...
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Materials Data Facility (MDF)
09 May 2024
The Materials Data Facility (MDF) is set of data services built specifically to support materials science researchers. MDF consists of two synergistic services, data publication and data discovery (in development). The production-ready data publication service offers...
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Clowder
09 May 2024
Clowder is a research data management system designed to support any data format and multiple research domains. The core software has been in development for the past five years with funding from a variety of sources. Clowder is open source software and we are always...
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MDAnalysis
09 May 2024
MDAnalysis is an object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, Amber or DL_POLY; it also reads other formats (e.g. PDB files and XYZ format trajectories; see the supported coordinate formats for...
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Brown Dog
09 May 2024
Brown Dog's goal is to prototype a highly distributed and extensible science driven Data Transformation Service (DTS). As a component of a national research cyberinfrastructure Brown Dog aims at making past and present research data more accessible and more useful to...
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PRODIGY (PROtein binDIng enerGY prediction)
09 May 2024
PRODIGY (PROtein binDIng enerGY prediction) is a collection of web services focused on the prediction of binding affinity in biological complexes as well as the identification of biological interfaces from crystallographic one.
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QuaFit
09 May 2024
QUAFIT is a novel method for the quaternary structure determination from small-angle x-ray and neutron scattering data. QUAFIT is based on the idea that asymmetric monomers, formed by rigid domains of known atomic structure possibly connected by flexible linkers of...
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PHI-base
09 May 2024
iPHI-base is a web-accessible database that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is therefore an invaluable resource...
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ITSoneDB
09 May 2024
ITSoneDB is a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences. It is aimed at supporting metabarcoding surveys of fungal and other microbial eukaryotic environmental communities. The sequences were extracted from...
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PARTHENOS
09 May 2024
PARTHENOS is a H2020 EU Project (Pooling Activities, Resources and Tools for Heritage E-research Networking, Optimization and Synergies). This gateway supports the project strengthening the cohesion of research in the broad sector of Linguistic Studies, Humanities,...
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Midwest Big Data Hub
09 May 2024
A diverse and committed network of partners has created a nimble and flexible regional Midwest Big Data Hub (MBDH) to address increasing challenges in collecting, managing, serving, mining, and analyzing rapidly growing and increasingly complex data and information...
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Drupal
09 May 2024
Drupal is content management software. It's used to make many of the websites and applications you use every day. Drupal has great standard features, like easy content authoring, reliable performance, and excellent security. But what sets it apart is its flexibility;...
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Dolbico
09 May 2024
A database for local biomolecular conformers
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Jalview
09 May 2024
Jalview is a free program for multiple sequence alignment editing, visualisation and analysis. Use it to view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and...
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ERGO
09 May 2024
Ergo, previously MAEviz, is an open-source project that helps reduce the time from discovery gap that exists between researchers, practitioners, and decision makers by integrating the latest research findings, most accurate data, and new methodologies into a single...
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Trellis
09 May 2024
Trellis is an interactive web-based application for argumentation and decision-making. Using Trellis, users can come to individual and collaborative conclusions on virtually any topic, from scientific discourse to political and policy views to deciding which product...
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RepeatExplorer
09 May 2024
RepeatExplorer is a computational pipeline designed to identify and characterize repetitive DNA elements in next generation sequencing data from plant and animal genomes. It employs graph-based clustering (Novak et al. 2010) of sequence reads to identify repetitive...
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Zenodo
09 May 2024
As CERN service, it is supported by European Commission, and powered by Invenio, digital repositories. It is a free and open-source software for the long-tail of science, enabling researchers to share and preserve any research outputs in any size, any format and from...
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InterPro
09 May 2024
InterPro provides a functional analysis of proteins by classifying them into families and predicting domains and important sites. It combines protein signatures from a number of member databases into a single searchable resource, capitalizing on their individual...
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WINGS
09 May 2024
WINGS is a semantic workflow system that assists scientists with the design of computational experiments. A computational experiment specifies how selected datasets are to be processed by a series of software components in a particular configuration. Earth scientists...
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Medicago truncatula genome database
09 May 2024
Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...