AMP Gateway for Atomic and Molecular Physics

09 May 2024 | Science Gateways

AMPGateway is an online portal that hosts a suite of codes being developed by the atomic and molecular physics community to study a variety of problems involving the time-independent and time-dependent Schrödinger equation. They include the calculation of cross...

Apache Airvata Testdrive Gateway

24 Jun 2024 | Science Gateways

The Airavata Django Portal is a web interface to the Apache Airavata API implemented using the Django web framework. The intention is that the Airavata Django Portal can be used as is for a full featured web based science gateway but it can also be customized through various plugins...

Biolearns

26 Jun 2024 | Science Gateways

To further facilitate the general needs of online real-time co-expression analysis, we develop biolearns, a python-based co-expression network analysis web tool.

Chem Compute

09 May 2024 | Science Gateways

The Chem Compute website allows students to easily access state of the art computational software for free. Our hope is that this will enable faculty to incorporate computational chemistry into their undergraduate teaching and research curriculum without the hassle...

CIPRES Portal for inference of large phylogenetic trees

09 May 2024 | Science Gateways

Cyberinfrastructure for Phylogenetic Research (CIPRES) project is an open collaboration funded by the National Science Foundation. The goal of the CIPRES project is to enable large-scale phylogenetic reconstructions. For more information please see www.phylo.org. We...

Computational Anatomy (caworks)

09 May 2024 | Science Gateways

Computational Anatomy (https://en.wikipedia.org/wiki/Computational_anatomy) is a discipline focused on the quantitative analysis of variability of biological shape. The Large Deformation Diffeomorphic Metric Mapping (LDDMM) software service aims to assign metric...

COSMIC2 Science Gateway

09 May 2024 | Science Gateways

Structural biology is in the midst of a revolution. Instrumentation and software improvements have allowed for the full realization of cryo-electron microscopy (cryo-EM) as a tool capable of determining atomic structures of protein and macromolecular samples. These...

Custos Admin Gateway

26 Jun 2024 | Science Gateways

Custos provides security services, including identity management, authorization management, and resource credential management, for science gateways

CyberGIS Gateway

09 May 2024 | Science Gateways

Geographic information is collected to support scientific investigations and decision-making in a wide variety of application domains (e.g., environment science, transportation, public health, and business). Enormous computational resources are needed to store and...

CyberWater

26 Jun 2024 | Science Gateways

To tackle fundamental scientific questions regarding health, resilience, and sustainability of water resources that encompass hydrological, biological, environmental, atmospheric, and other geosciences that define the Earth system, researchers need to be able to easily access diverse data...

DELTA Topology Gateway

09 May 2024 | Science Gateways

The project “Descriptors of Energy Landscapes Using Topological Data Analysis (DELTA)” is an National Science Foundation (NSF) funded HDR Institute Frameworks that is advancing topological data analysis (TDA) and machine learning algorithms for the study of intensive...

DesignSafe-CI

09 May 2024 | Science Gateways

DesignSafe-ci.org (DesignSafe) is the CI component of the NHERI collaboration. DesignSafe embraces a “cloud” strategy for the “big data” generated in natural hazards engineering research. It supports research workflows, data analysis and visualization, and the full...

dREG gateway

09 May 2024 | Science Gateways

The dREG gateway allows users to identify the location of promoters and enhancers using PRO-seq, GRO-seq, or ChRO-seq data. Our genomes encode not just protein-coding genes, but also the transcriptional regulatory elements (TREs) that encode the temporal and spatial...

EDGE-Bioinformatics-Gateway

26 Jun 2024 | Science Gateways

The EDGE Bioinformatics Science Gateway was developed to help biologists, educators and public-health professionals process Next Generation Sequencing data (in the form of raw FASTQ files), even if they have little to no bioinformatics expertise. EDGE is a highly integrated and interactive...

Future Water Indiana

26 Jun 2024 | Science Gateways

This project is part of Indiana University's Grand Challenges Prepared for Environmental Change project. For this project, we are building a computer-based watershed model of the Wabash River Basin. This model will be used to investigate climate change impacts on water resources in Indiana....

Galaxy Software Framework

09 May 2024 | Science Gateways

Galaxy software framework is an open-source application. Its goal is to develop and maintain a system that enables researchers without informatics expertise to perform computational analyses through the web. A user interacts with Galaxy through the web by uploading...

GenePattern

09 May 2024 | Science Gateways

GenePattern is a powerful genomic analysis platform that provides access to hundreds of tools for gene expression analysis, proteomics, SNP analysis, flow cytometry, RNA-seq analysis, and common data processing tasks. A web-based interface provides easy access to...

GEO-ABM for Analysis of COVID-19 Transmission

26 Jun 2024 | Science Gateways

This gateway helps schools and school districts understand the risks of COVID-19 transmission in schools and the potential effects of non-pharmaceutical interventions using a spatiallly-explicit agent-based model

GISandbox

09 May 2024 | Science Gateways

GISandbox is a play place for researchers and educators to learn about, experiment with, and advance geographic information systems and science (GIS). GISandbox blends GIS and computing, which encompasses spatial analysis and modeling, agent-based models, as well as...

Global Floods Monitoring

26 Jun 2024 | Science Gateways

"We are researchers from the approved project ASC190069: Deep Convolutional Neural Network based Learning of Disaster Induced Changes in Remote Sensing Images. With our ongoing progress and success in using the Bridges2-GPU-AI infrastructure, we are planning to develop a science gateway...

Globus: Research data management simplified

09 May 2024 | Science Gateways

Globus is a secure, reliable research data management service. With Globus, you can move, share, publish & discover data via a single interface. Whether your files live on a supercomputer, lab cluster, tape archive, public cloud or your laptop, you can manage them...

High-Resolution Modeling of Hydrodynamic Experiments with UltraScan

26 Jun 2024 | Science Gateways

This XSEDE ACCESS portal provides access to the high performance computing back-end of UltraScan (https://www.ultrascan.aucsolutions.comuthscsa.edu) which is used to analyze analytical ultracentrifugation experiments by high-resolution methods. Users can request an individual database instance...

I-TASSER

09 May 2024 | Science Gateways

This will be a server for I-TASSER. I-TASSER is a hierarchical method developed in the PI’s lab that was designed to construct full-length protein structure models, starting from amino acid sequences, by assembling continuous fragments excised from threading template...

Metaproteomics Gateway

26 Jun 2024 | Science Gateways

Galaxy-P platform offers an open source, bioinformatics platform for disseminating metaproteomics software and workflows. This was a result of metaproteomics contribution-fest (z.umn.edu/mphack2016) which generated easily accessible and documented metaproteomic software tools and workflows. The...

Microbial Genomes Atlas

26 Jun 2024 | Science Gateways

The Microbial Genomes Atlas –MiGA– processes Prokaryotic genomes (draft or complete), applies different quality checks, and identifies the closest relatives in public databases using a combination of genome-wide identity metrics such as the average nucleotide identity (ANI) and the...