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BamBam
09 May 2024 | Tools
BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...
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Citizen Science Alliance
09 May 2024 | Science Gateways
The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...
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Citizen Science Alliance
09 May 2024 | Science Gateways
The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...
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CottonGen
09 May 2024 | Science Gateways
CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.
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Crops in silico
09 May 2024 | Science Gateways
Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...
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Earth Science Information Partners (ESIP)
09 May 2024 | Science Gateways
The Federation of Earth Science Information Partners (ESIP) is an open, networked community that brings together science, data and information technology practitioners. Participation in ESIP is beneficial because it provides an intellectual commons to expose, gather...
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Genome Database for Rosaceae (GDR)
09 May 2024 | Science Gateways
The Genome Database for Rosaceae is a curated and integrated web-based relational database providing data mining tools and publicly available genomics, genetics and breeding data for Rosaceae (almond, apple, blackberry, cherry, peach, pear, plum, raspberry, rose, and...
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Genomics Virtual Laboratory (GVL)
09 May 2024 | Science Gateways
The Genomics Virtual Laboratory (GVL) provides a cloud-based suite of genomics analysis tools for research and training.
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Genomicus
09 May 2024 | Science Gateways
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in...
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GenSAS
09 May 2024 | Science Gateways
The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and...
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HRGRN
09 May 2024 | Science Gateways
We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...
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Medicago truncatula genome database
09 May 2024 | Science Gateways
Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...
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metastudio
09 May 2024 | Science Gateways
A platform evolving as an online academy for collaborative learning with a focus on the culture of learning as against content for learning. This platform is being made and maintained by the gnowledge lab of Homi Bhabha Centre for Science Education, Tata Institute of...
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MicroScope
09 May 2024 | Science Gateways
MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.
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NCBI Genome Workbench
09 May 2024 | Science Gateways
Genome Workbench offers researchers a rich set of integrated tools for studying and analyzing genetic data. Users can explore and compare data from multiple sources including the NCBI databases or the user’s own private data. Data analysis in Genome Workbench is...
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NCI Community Hub
09 May 2024 | Science Gateways
The NCI Community Hub is a site for community research and collaboration in cancer research and informatics. Users can share resources, host online communities, and use collaboration tools . These resources are available to visitors ...
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nectar
09 May 2024 | Science Gateways
The National eResearch Collaboration Tools and Resources project (Nectar) provides an online infrastructure that supports researchers to connect with colleagues in Australia and around the world, allowing them to collaborate and share ideas and research outcomes,...
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OMA
09 May 2024 | Science Gateways
The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.
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PeanutBase
09 May 2024 | Science Gateways
This web portal is designed to provide convenient access to peanut genetic and genomic data deriving from U.S. and international research, and particularly from the Peanut Genomics Initiative: The U.S. industry has embarked on an ambitious plan to map the peanut...
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PharmaHUB
09 May 2024 | Science Gateways
pharmaHUB deals with collaboration and sharing of information on processes and products of pharmaceutical products.
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PURR
09 May 2024 | Science Gateways
The Purdue University Research Repository (PURR) is a research collaboration and data management solution for Purdue researchers and their collaborators. PURR allows you to collaborate on research andThe Purdue University Research Repository (PURR) is a university...
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Reactome
09 May 2024 | Science Gateways
REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...
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Simiode
09 May 2024 | Science Gateways
An open community of teachers and learners using modeling first differential equations in an original way.
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SoyBase
09 May 2024 | Science Gateways
SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...
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StemedHUB
09 May 2024 | Science Gateways
This site represents a collection of projects all focused on transforming education to improve learning and retention in Science, Technology, Engineering, and Mathematics (STEM).