ADCIRC

09 May 2024

ADCIRC is a system of computer programs for solving time dependent, free surface circulation and transport problems in two and three dimensions. These programs utilize the finite element method in space allowing the use of highly flexible, unstructured grids. Typical...

Amber

09 May 2024

Amber is a suite of biomolecular simulation programs. The term "Amber" refers to two things. First, it is a set of molecular mechanical force fields for the simulation of biomolecules (these force fields are in the public domain, and are used in a variety of...

AMP Gateway for Atomic and Molecular Physics

09 May 2024 | Science Gateways

AMPGateway is an online portal that hosts a suite of codes being developed by the atomic and molecular physics community to study a variety of problems involving the time-independent and time-dependent Schrödinger equation. They include the calculation of cross...

Anecdata.org

09 May 2024 | Science Gateways

Anecdata.org is a free online citizen science platform developed by the Community Lab at the MDI Biological Laboratory in Bar Harbor, Maine.Anecdata.org is used by hundreds of individuals and organizations to gather and access citizen science...

Apache Airavata

09 May 2024 | Science Gateways

Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.

Apache Airvata Testdrive Gateway

24 Jun 2024 | Science Gateways

The Airavata Django Portal is a web interface to the Apache Airavata API implemented using the Django web framework. The intention is that the Airavata Django Portal can be used as is for a full featured web based science gateway but it can also be customized through various plugins...

AtlanticWave-Software Defined Exchange (SDX)

09 May 2024 | Science Gateways

AtlanticWave-Software Defined Exchange (SDX) is a distributed intercontinental experimental SDX, supporting research, experimental deployments, prototyping and interoperability testing, on national and international scales.

BamBam

09 May 2024 | Tools

BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...

Biolearns

26 Jun 2024 | Science Gateways

To further facilitate the general needs of online real-time co-expression analysis, we develop biolearns, a python-based co-expression network analysis web tool.

BOINC: Compute for Science

09 May 2024 | Science Gateways

BOINC lets you help cutting-edge science research using your computer (Windows, Mac, Linux) or Android device. BOINC downloads scientific computing jobs to your computer and runs them invisibly in the background. It's easy and safe. About 30 science projects use...

Brown Dog

09 May 2024 | Science Gateways

Brown Dog's goal is to prototype a highly distributed and extensible science driven Data Transformation Service (DTS). As a component of a national research cyberinfrastructure Brown Dog aims at making past and present research data more accessible and more useful to...

BUSCO

09 May 2024 | Science Gateways

BUSCO v3 provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.

C++Explorer

09 May 2024 | Science Gateways

This repo builds a JupyterHub/Jupyter notebook server which offers an interactive C++ experience. The primary interface for this is through cling notebooks (cling is the C++ interpreter). We extend the cling notebook with certain magics, (namely %%writefile and...

Cactus Code

09 May 2024 | Science Gateways

Cactus provides computational scientists and engineers with a collaborative, modular and portable programming environment for parallel high performance computing. Cactus can make use of many other technologies for HPC, such as Samrai, HDF5, PETSc and PAPI, and...

CANARIE's Research Platforms

09 May 2024 | Science Gateways

The goal of CANARIE’s Research Software Program is to accelerate discovery and give Canada a first-mover advantage in accessing and leveraging digital infrastructure resources and tools.

Chem Compute

09 May 2024 | Science Gateways

The Chem Compute website allows students to easily access state of the art computational software for free. Our hope is that this will enable faculty to incorporate computational chemistry into their undergraduate teaching and research curriculum without the hassle...

CILogon

09 May 2024 | Science Gateways

CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...

CIPRES Portal for inference of large phylogenetic trees

09 May 2024 | Science Gateways

Cyberinfrastructure for Phylogenetic Research (CIPRES) project is an open collaboration funded by the National Science Foundation. The goal of the CIPRES project is to enable large-scale phylogenetic reconstructions. For more information please see www.phylo.org. We...

Cloudmesh Client Toolkit

09 May 2024 | Science Gateways

The cloudmesh client toolkit is a lightweight client interface of accessing heterogeneous clouds, clusters, and workstations right from the users computer. The user can manage his own set of resources he would like to utilize. Thus the user has the freedom to...

Clowder

09 May 2024 | Science Gateways

Clowder is a research data management system designed to support any data format and multiple research domains. The core software has been in development for the past five years with funding from a variety of sources. Clowder is open source software and we are always...

COCALC

09 May 2024 | Science Gateways

CoCalc(Collaborative Calculation in the Cloud) is a sophisticated web service for online computation and provides the collaborative environment to share your files privately with project collaborators.

Code Ocean

09 May 2024 | Science Gateways

Code Ocean is a cloud-based computational reproducibility platform that provides researchers and developers an easy way to share, discover and run code published in academic journals and conferences.

Computational Anatomy (caworks)

09 May 2024 | Science Gateways

Computational Anatomy (https://en.wikipedia.org/wiki/Computational_anatomy) is a discipline focused on the quantitative analysis of variability of biological shape. The Large Deformation Diffeomorphic Metric Mapping (LDDMM) software service aims to assign metric...

COSMIC2 Science Gateway

09 May 2024 | Science Gateways

Structural biology is in the midst of a revolution. Instrumentation and software improvements have allowed for the full realization of cryo-electron microscopy (cryo-EM) as a tool capable of determining atomic structures of protein and macromolecular samples. These...

CottonGen

09 May 2024 | Science Gateways

CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.