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  1. ADCIRC

    09 May 2024

    ADCIRC is a system of computer programs for solving time dependent, free surface circulation and transport problems in two and three dimensions. These programs utilize the finite element method in space allowing the use of highly flexible, unstructured grids. Typical...

  2. Amber

    09 May 2024

    Amber is a suite of biomolecular simulation programs. The term "Amber" refers to two things. First, it is a set of molecular mechanical force fields for the simulation of biomolecules (these force fields are in the public domain, and are used in a variety of...

  3. Apache Airavata

    09 May 2024

    Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.

  4. ARP/wARP 8.0

    09 May 2024

    ARP/wARP is a software project for automated protein model building and refinement. ARP/wARP combines pattern recognition-based interpretation of an electron density, its modelling as a hybrid model and a maximum likelihood parameter refinement with REFMAC.

  5. AtlanticWave-Software Defined Exchange (SDX)

    09 May 2024

    AtlanticWave-Software Defined Exchange (SDX) is a distributed intercontinental experimental SDX, supporting research, experimental deployments, prototyping and interoperability testing, on national and international scales.

  6. BamBam

    09 May 2024

    BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...

  7. BOINC: Compute for Science

    09 May 2024

    BOINC lets you help cutting-edge science research using your computer (Windows, Mac, Linux) or Android device. BOINC downloads scientific computing jobs to your computer and runs them invisibly in the background. It's easy and safe. About 30 science projects use...

  8. Brown Dog

    09 May 2024

    Brown Dog's goal is to prototype a highly distributed and extensible science driven Data Transformation Service (DTS). As a component of a national research cyberinfrastructure Brown Dog aims at making past and present research data more accessible and more useful to...

  9. BUSCO

    09 May 2024

    BUSCO v3 provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.

  10. C++Explorer

    09 May 2024

    This repo builds a JupyterHub/Jupyter notebook server which offers an interactive C++ experience. The primary interface for this is through cling notebooks (cling is the C++ interpreter). We extend the cling notebook with certain magics, (namely %%writefile and...

  11. Cactus Code

    09 May 2024

    Cactus provides computational scientists and engineers with a collaborative, modular and portable programming environment for parallel high performance computing. Cactus can make use of many other technologies for HPC, such as Samrai, HDF5, PETSc and PAPI, and...

  12. CANARIE's Research Platforms

    09 May 2024

    The goal of CANARIE’s Research Software Program is to accelerate discovery and give Canada a first-mover advantage in accessing and leveraging digital infrastructure resources and tools.

  13. CILogon

    09 May 2024

    CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...

  14. Cloudmesh Client Toolkit

    09 May 2024

    The cloudmesh client toolkit is a lightweight client interface of accessing heterogeneous clouds, clusters, and workstations right from the users computer. The user can manage his own set of resources he would like to utilize. Thus the user has the freedom to...

  15. Clowder

    09 May 2024

    Clowder is a research data management system designed to support any data format and multiple research domains. The core software has been in development for the past five years with funding from a variety of sources. Clowder is open source software and we are always...

  16. Code Ocean

    09 May 2024

    Code Ocean is a cloud-based computational reproducibility platform that provides researchers and developers an easy way to share, discover and run code published in academic journals and conferences.

  17. CottonGen

    09 May 2024

    CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.

  18. Critical Zone Observatories

    09 May 2024 | Science Gateways

    The National CZO Program is a community resource. The Program serves the international scientific community through research, infrastructure, data, and models. We focus on how components of the Critical Zone interact, shape Earth's surface, and support life. If you...

  19. Crops in silico

    09 May 2024 | Science Gateways

    Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...

  20. CyberGIS Toolkit

    09 May 2024 | Science Gateways

    CyberGIS Toolkit is a suite of loosely coupled open-source geospatial software components that provide computationally scalable spatial analysis and modeling capabilities enabled by advanced cyberinfrastructure. CyberGIS Toolkit represents a deep approach to CyberGIS...

  21. Cyclus

    09 May 2024 | Science Gateways

    Cyclus is the next-generation agent-based nuclear fuel cycle simulator, providing flexibility to users and developers through a dynamic resource exchange solver and plug-in, user-developed agent framework. The goal of Cyclus is to enable a broad spectrum of fuel...

  22. CyVerse

    09 May 2024 | Science Gateways

    CyVerse fills a niche created by the computing epoch and a rapidly evolving world. Developing solutions to today’s grand scientific challenges means that we must understand how the organisms that contribute to our food, fuels, and ecosystem are shaped by interactions...

  23. Data Wolf

    09 May 2024 | Science Gateways

    Data Wolf is designed to facilitate the documentation and dissemination of scientific work with a system that makes it easy to create and share workflows while separating the science from the logistics of execution. This allows scientists to focus on research without...

  24. DataConservancy (DC)

    09 May 2024 | Science Gateways

    The Data Conservancy (DC) was launched through a grant from the National Science Foundation’s DataNet program, which built upon prior experience with managing data from the Sloan Digital Sky Survey. The grant provided the DC team an opportunity to broaden its data...

  25. Dataverse - Open source research data repository software

    09 May 2024 | Science Gateways

    Dataverse is an open source web application to share, preserve, cite, explore, and analyze research data. It facilitates making data available to others, and allows you to replicate others' work more easily. Researchers, journals, data authors, publishers, data...