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Apache Airavata
09 May 2024
Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.
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BamBam
09 May 2024 | Tools
BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...
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CILogon
09 May 2024 | Science Gateways
CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...
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Citizen Science Alliance
09 May 2024 | Science Gateways
The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...
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Citizen Science Alliance
09 May 2024 | Science Gateways
The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...
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CottonGen
09 May 2024 | Science Gateways
CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.
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Crops in silico
09 May 2024 | Science Gateways
Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...
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CyVerse
09 May 2024 | Science Gateways
CyVerse fills a niche created by the computing epoch and a rapidly evolving world. Developing solutions to today’s grand scientific challenges means that we must understand how the organisms that contribute to our food, fuels, and ecosystem are shaped by interactions...
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Diagrid
09 May 2024 | Science Gateways
Allows science software to be run through a web browser
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FieldScope
09 May 2024 | Science Gateways
Learn about FieldScope on this page and then select from one of the existing projects to explore or join (find a list of projects here). Projects currently in progress investigate topics such as water quality, phenology, and environmental restoration. More...
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FieldScope
09 May 2024 | Science Gateways
Learn about FieldScope on this page and then select from one of the existing projects to explore or join (find a list of projects here). Projects currently in progress investigate topics such as water quality, phenology, and environmental restoration. More...
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Galaxy Software Framework
09 May 2024 | Science Gateways
Galaxy software framework is an open-source application. Its goal is to develop and maintain a system that enables researchers without informatics expertise to perform computational analyses through the web. A user interacts with Galaxy through the web by uploading...
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GenApp
09 May 2024 | Science Gateways
GenApp is a tool that can help people with existing code generate stand alone applications and science gateways. GenApp gateway generation is based upon definition files. User supplied code is brought into GenApp by writing a definition file and modifying or wrapping...
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Genome Database for Rosaceae (GDR)
09 May 2024 | Science Gateways
The Genome Database for Rosaceae is a curated and integrated web-based relational database providing data mining tools and publicly available genomics, genetics and breeding data for Rosaceae (almond, apple, blackberry, cherry, peach, pear, plum, raspberry, rose, and...
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Genomics Virtual Laboratory (GVL)
09 May 2024 | Science Gateways
The Genomics Virtual Laboratory (GVL) provides a cloud-based suite of genomics analysis tools for research and training.
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Genomicus
09 May 2024 | Science Gateways
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in...
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GenSAS
09 May 2024 | Science Gateways
The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and...
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Globus: Research data management simplified
09 May 2024 | Science Gateways
Globus is a secure, reliable research data management service. With Globus, you can move, share, publish & discover data via a single interface. Whether your files live on a supercomputer, lab cluster, tape archive, public cloud or your laptop, you can manage them...
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HRGRN
09 May 2024 | Science Gateways
We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...
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INCA: Monitoring Tool
09 May 2024 | Science Gateways
Determining whether a Grid is up in the face of complex Grid software deployments can be difficult and depends on the types of applications and users that utilize it. By detailing a set of software, services, and features that should be available on a Grid in a...
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IndianaCTSI
09 May 2024 | Science Gateways
The Indiana Clinical and Translational Sciences Institute (CTSI) is an integrated home for clinical and translational research that provides easily accessible resources, services, and training in a collaborative environment. Our mission is to create...
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Jupyter Notebook
09 May 2024 | Science Gateways
The Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data...
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Medicago truncatula genome database
09 May 2024 | Science Gateways
Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...
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metastudio
09 May 2024 | Science Gateways
A platform evolving as an online academy for collaborative learning with a focus on the culture of learning as against content for learning. This platform is being made and maintained by the gnowledge lab of Homi Bhabha Centre for Science Education, Tata Institute of...
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MicroScope
09 May 2024 | Science Gateways
MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.