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  1. Custos Admin Gateway

    26 Jun 2024 | Science Gateways

    Custos provides security services, including identity management, authorization management, and resource credential management, for science gateways

  2. EDGE-Bioinformatics-Gateway

    26 Jun 2024 | Science Gateways

    The EDGE Bioinformatics Science Gateway was developed to help biologists, educators and public-health professionals process Next Generation Sequencing data (in the form of raw FASTQ files), even if they have little to no bioinformatics expertise. EDGE is a highly integrated and interactive...

  3. CyberWater

    26 Jun 2024 | Science Gateways

    To tackle fundamental scientific questions regarding health, resilience, and sustainability of water resources that encompass hydrological, biological, environmental, atmospheric, and other geosciences that define the Earth system, researchers need to be able to easily access diverse data...

  4. Biolearns

    26 Jun 2024 | Science Gateways

    To further facilitate the general needs of online real-time co-expression analysis, we develop biolearns, a python-based co-expression network analysis web tool.

  5. Future Water Indiana

    26 Jun 2024 | Science Gateways

    This project is part of Indiana University's Grand Challenges Prepared for Environmental Change project. For this project, we are building a computer-based watershed model of the Wabash River Basin. This model will be used to investigate climate change impacts on water resources in Indiana....

  6. GEO-ABM for Analysis of COVID-19 Transmission

    26 Jun 2024 | Science Gateways

    This gateway helps schools and school districts understand the risks of COVID-19 transmission in schools and the potential effects of non-pharmaceutical interventions using a spatiallly-explicit agent-based model

  7. Global Floods Monitoring

    26 Jun 2024 | Science Gateways

    "We are researchers from the approved project ASC190069: Deep Convolutional Neural Network based Learning of Disaster Induced Changes in Remote Sensing Images. With our ongoing progress and success in using the Bridges2-GPU-AI infrastructure, we are planning to develop a science gateway...

  8. High-Resolution Modeling of Hydrodynamic Experiments with UltraScan

    26 Jun 2024 | Science Gateways

    This XSEDE ACCESS portal provides access to the high performance computing back-end of UltraScan (https://www.ultrascan.aucsolutions.comuthscsa.edu) which is used to analyze analytical ultracentrifugation experiments by high-resolution methods. Users can request an individual database instance...

  9. Metaproteomics Gateway

    26 Jun 2024 | Science Gateways

    Galaxy-P platform offers an open source, bioinformatics platform for disseminating metaproteomics software and workflows. This was a result of metaproteomics contribution-fest (z.umn.edu/mphack2016) which generated easily accessible and documented metaproteomic software tools and workflows. The...

  10. Microbial Genomes Atlas

    26 Jun 2024 | Science Gateways

    The Microbial Genomes Atlas –MiGA– processes Prokaryotic genomes (draft or complete), applies different quality checks, and identifies the closest relatives in public databases using a combination of genome-wide identity metrics such as the average nucleotide identity (ANI) and the...

  11. Open Knowledge of Interatomic Models

    26 Jun 2024 | Science Gateways

    The Open Knowledgebase of Interatomic Models (OpenKIM) is an interatomic potential repository and an online framework for making molecular simulations reliable, reproducible, and portable. Computer implementations of interatomic models are archived in OpenKIM, verified for coding integrity, and...

  12. Plasma Science Virtual Laboratory

    26 Jun 2024 | Science Gateways

    The Plasma Science Virtual Laboratory (VLab) is the gateway that drives the Gkeyll workflow executions on a wide range of HPC systems. The VLab is deployed with hosted gateway platform SciGaP, using Apache Airavata middleware as the underlying middleware that provides gateways. Gkeyll is a...

  13. Proteogenomics Gateway

    26 Jun 2024 | Science Gateways

    This page provides links to instructional materials describing how to access and use the proteogenomic workflows described in the manuscript text. Please access the links indicated below for the following materials: Training on usegalaxyp.org How to access and use the usegalaxyp.org training...

  14. Providing a Neuroscience Gateway

    26 Jun 2024 | Science Gateways

    The Neuroscience Gateway (NSG) is an open project funded by the National Science Foundation and developed by researchers from UCSD and Yale University. The NSG (www.nsgportal.org) is a software infrastructure that allows computational neuroscience researchers and students to easily utilize HPC...

  15. Searching the SRA

    26 Jun 2024 | Science Gateways

    Searching the SRA provides a gateway for researchers to explore sequence data from publicly available metagenomics projects in the Sequence Read Archive, You can upload a DNA or protein query sequence, and quickly scan for the presence of that sequence in over 100,000 freely available datasets...

  16. Snow Vision

    26 Jun 2024 | Science Gateways

    Our team of archaeologists, computer scientists, and digital humanists unites outstanding problems in art and archaeology and cutting-edge computer-vision research – an example of digital humanities par excellence – to automate the matching of stamped pottery sherds in order to...

  17. Visualizing Statistical Concepts: A collection of tools for emerging music education researchers

    26 Jun 2024 | Science Gateways

    "I created a virtual machine with the statistical program R installed. R is a free, open-source statistical computing and graphics language and is a flexible platform for organizing, visualizing, and analyzing data. The web applications accessible from the page were built with an...

  18. Apache Airvata Testdrive Gateway

    24 Jun 2024 | Science Gateways

    The Airavata Django Portal is a web interface to the Apache Airavata API implemented using the Django web framework. The intention is that the Airavata Django Portal can be used as is for a full featured web based science gateway but it can also be customized through various plugins...

  19. SoyBase

    09 May 2024 | Science Gateways

    SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...

  20. IPUMS TERRA

    09 May 2024 | Science Gateways

    Our understanding of interactions between population and environment has been hampered by differences in the data structures and analysis methods and tools used within different disciplines, as well as a dearth of internationally comparable data. Closely integrating...

  21. Social Media Macroscope

    09 May 2024 | Science Gateways

    The Social Media Macroscope is a project by University of Illinois Technology Services and the National Center for Supercomputing Applications (NCSA) with the goal of making social media data, analytics, and visualization tools accessible to researchers and students...

  22. Community Surface Dynamics Modeling System (CSDMS)

    09 May 2024 | Science Gateways

    CSDMS is an organization that promotes computational modeling of earth-surface processes by providing support for community, computing, and education. The Community Surface Dynamics Modeling System (CSDMS) deals with the Earth's surface - the ever-changing, dynamic...

  23. EcologyPlus

    09 May 2024 | Science Gateways

    Our Mission: EcologyPlus connects diverse college students and early career scientists with timely and relevant career opportunities and a community of peers and professionals in ecology and related careers across all sectors.What is EcologyPlus? ...

  24. Medicago truncatula genome database

    09 May 2024 | Science Gateways

    Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...

  25. INTERACTIVE PARALLELIZATION TOOL (IPT)

    09 May 2024 | Science Gateways

    Interactive Parallelization Tool (IPT) assists domain-­experts and students in efficiently parallelizing their existing C/C++ applications using any of the following parallel programming models: Message Passing Interface (MPI), OpenMP, CUDA, and hybrid programming....