HRGRN

09 May 2024

We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...

Molecular Space

09 May 2024

The Clean Energy Project (CEP) is a virtual high-throughput discovery and design effort for the next generation of plastic solar cell materials. We study millions of candidate structures to identify suitable compounds for the harvesting of renewable energy from the...

European Variation Archive (EVA)

09 May 2024

The European Variation Archive (EVA) is an open-access database of all types of genetic variation data from all species.

The Triticeae Toolbox (T3)

09 May 2024

T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data...

The Triticeae Toolbox (T3)

09 May 2024

T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data...

VEP

09 May 2024

VEP (Variant Effect Predictor) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

Vega

09 May 2024

Vega is a repository for high-quality gene models produced by the manual annotation of vertebrate genomes.

nectar

09 May 2024

The National eResearch Collaboration Tools and Resources project (Nectar) provides an online infrastructure that supports researchers to connect with colleagues in Australia and around the world, allowing them to collaborate and share ideas and research outcomes,...

NCBI Genome Workbench

09 May 2024

Genome Workbench offers researchers a rich set of integrated tools for studying and analyzing genetic data. Users can explore and compare data from multiple sources including the NCBI databases or the user’s own private data. Data analysis in Genome Workbench is...

CottonGen

09 May 2024

CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.

PHARMACOLOGY

09 May 2024

One of the main aims is to provide a searchable database with quantitative information on drug targets and the prescription medicines and experimental drugs that act on them. The information in the database is presented at two levels: the initial view or landing...

Benchmark Energy & Geometry Database (BEGDB)

09 May 2024

The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate QM calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.

Crops in silico

09 May 2024

Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...

MetalPDB

09 May 2024

MetalPDB collects and allows easy access to the knowledge on metal sites in biological macromolecules, starting from the structural information contained in the Protein Data Bank (PDB).

SwissRegulon Portal

09 May 2024

A repository of computational biology tools and databases developed by the van Nimwegen lab

SwissRegulon Portal

09 May 2024

A repository of computational biology tools and databases developed by the van Nimwegen lab

PeanutBase

09 May 2024

This web portal is designed to provide convenient access to peanut genetic and genomic data deriving from U.S. and international research, and particularly from the Peanut Genomics Initiative: The U.S. industry has embarked on an ambitious plan to map the peanut...

StemedHUB

09 May 2024

This site represents a collection of projects all focused on transforming education to improve learning and retention in Science, Technology, Engineering, and Mathematics (STEM).

NCI Community Hub

09 May 2024

The NCI Community Hub is a site for community research and collaboration in cancer research and informatics. Users can share resources, host online communities, and use collaboration tools . These resources are available to visitors ...

BIGNASim

09 May 2024

BIGNASim, a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.

PURR

09 May 2024

The Purdue University Research Repository (PURR) is a research collaboration and data management solution for Purdue researchers and their collaborators. PURR allows you to collaborate on research andThe Purdue University Research Repository (PURR) is a university...

Wheat Tilling

09 May 2024

Wheat Target Induced Local Lesions In Genome (TILLING) project based on the tetraploid wheat line Triticum turgidum cv. Kronos. This project entails targeted re-sequencing of the protein coding regions of over 1500 EMS mutagenized individuals from the Kronos...

TreeGenes

09 May 2024

TreeGenes is a collection of forest tree genome databases and other forest genetic information resources for the international forest genetics community. Dendrome is part of a larger collaborative effort to construct genome databases for major crop and forest...

GenSAS

09 May 2024

The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and...

BamBam

09 May 2024 | Tools

BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...