SoyBase

09 May 2024

SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...

Medicago truncatula genome database

09 May 2024

Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...

MicroScope

09 May 2024 | Science Gateways

MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.

Reactome

09 May 2024 | Science Gateways

REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...

OMA

09 May 2024 | Science Gateways

The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.

LegumeIP

09 May 2024 | Science Gateways

LegumeIP is an integrative database and bioinformatics platform for comparative genomics and transcriptomics to facilitate the study of gene function and genome evolution in legumes,to understand mechanisms that are fundamental to the legume species, especially the...

GnpIS(Genetic and Genomic Information System)

09 May 2024 | Science Gateways

The tool allows plant scientists or breeders to get associations values between traits and markers obtained in several association studies. Several filters are available to refine the query, such as the species, trait (s), or marker (s) or panel of germplasms. The...

Omics

09 May 2024 | Science Gateways

The RDS Omics project is an RDS-funded flagship project to provide cloud-based data services and tools for Australian Life Science Researchers to combine, analyse and interpret genomic (DNA), transcriptomic (RNA), proteomic (proteins) and metabolomic (small...

OMICTools

09 May 2024 | Science Gateways

OMICtools is the first community search platform offering an intuitive search experience to retrieve biological data analysis tools. Connect with users to share and discuss tools. Bridge the gap between life science and computational biology.

HRGRN

09 May 2024 | Science Gateways

We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...

CTD² Data Portal

09 May 2024 | Science Gateways

CTD2 bridges the gap between the enormous volumes of data generated by genomic characterization studies and the ability to use these data for the development of human cancer therapeutics. It specializes in computational and functional genomics approaches critical for...

iNquiry

09 May 2024 | Science Gateways

The iNquiry is a BioTeam production. BioTeam is a high-performance consulting practice. We are dedicated to delivering objective, technology agnostic solutions to life science researchers. We leverage the right technologies customized to our clients unique needs in...

The Triticeae Toolbox (T3)

09 May 2024 | Science Gateways

T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data...

Wheat3BMine

09 May 2024 | Science Gateways

Wheat3BMine is a data warehouse dedicated to wheat 3B chromosome. It is developed using InterMine technology, providing a fast, flexible and user friendly access to integrated data by multiple ways: a browser, a query builder and a region search tool. Wheat3BMine...

VEP

09 May 2024 | Science Gateways

VEP (Variant Effect Predictor) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

IGSR: The International Genome Sample Resource

09 May 2024 | Science Gateways

The goal of the 1000 Genomes Project was to find most genetic variants with frequencies of at least 1% in the populations studied.

Vega

09 May 2024 | Science Gateways

Vega is a repository for high-quality gene models produced by the manual annotation of vertebrate genomes.

NCBI Genome Workbench

09 May 2024 | Science Gateways

Genome Workbench offers researchers a rich set of integrated tools for studying and analyzing genetic data. Users can explore and compare data from multiple sources including the NCBI databases or the user’s own private data. Data analysis in Genome Workbench is...

CottonGen

09 May 2024 | Science Gateways

CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.

ArrayExpress

09 May 2024 | Science Gateways

ArrayExpress Archive of Functional Genomics Data stores data from high-throughput functional genomics experiments, and provides these data for reuse to the research community.

Tripal

09 May 2024 | Science Gateways

Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database, and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content...

Crops in silico

09 May 2024 | Science Gateways

Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...

SwissRegulon Portal

09 May 2024 | Science Gateways

A repository of computational biology tools and databases developed by the van Nimwegen lab

CoGe(Comparative Genomics)

09 May 2024 | Science Gateways

CoGe is a platform for performing Comparative Genomics research. It provides an open-ended network of interconnected tools to manage, analyze, and visualize next-gen data.

PeanutBase

09 May 2024 | Science Gateways

This web portal is designed to provide convenient access to peanut genetic and genomic data deriving from U.S. and international research, and particularly from the Peanut Genomics Initiative: The U.S. industry has embarked on an ambitious plan to map the peanut...