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  1. Amos Gateway

    09 Feb 2022

    The overarching goal of the project is create a comprehensive cyberinfrastructure for the atomic, molecular, and optical science (AMOS) community where practitioners can access a synergistic, full-scope platform for computational AMOS. The developers...

  2. CoMSES Net: Network for Computational Modeling in the Social and Ecological Sciences

    12 Nov 2020

    CoMSES Net is an international network of researchers, educators and professionals with the common goal of improving the way we develop, share, and use computational modeling in the social and ecological sciences. 

  3. SimCCS Gateway

    11 Sep 2019

    SimCCS is a decision support tool for integrated assessment of carbon capture, utilization and storage technology developed by members of the U.S.-China Clean Energy Research Center, Advanced Coal Technology Consortium. SimCCS Gateway is a science gateway built from...

  4. Coastal Emergency Risks Assessment (CERA)

    11 Sep 2019

    The Coastal Emergency Risks Assessment (CERA) group delivers storm surge and wave predictions for impending or active tropical cyclones in the United States. Based on the Advanced Circulation and Storm Surge model (ADCIRC), the CERA web mapping application provides...

  5. Indiana Watershed Initiative

    11 Sep 2019

    A project where multiple partners are working to monitor the impacts of cover crops and two-stage drainage ditches on soil health and water quality in Indiana. Our overarching goal is to help farmers and landowners implement watershed-scale conservation practices...

  6. Wheat Tilling

    11 Sep 2019

    Wheat Target Induced Local Lesions In Genome (TILLING) project based on the tetraploid wheat line Triticum turgidum cv. Kronos. This project entails targeted re-sequencing of the protein coding regions of over 1500 EMS mutagenized individuals from the Kronos...

  7. TreeGenes

    11 Sep 2019

    TreeGenes is a collection of forest tree genome databases and other forest genetic information resources for the international forest genetics community. Dendrome is part of a larger collaborative effort to construct genome databases for major crop and forest...

  8. GenSAS

    11 Sep 2019

    The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and...

  9. BamBam

    11 Sep 2019

    BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...

  10. Genomicus

    11 Sep 2019

    Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in...

  11. Genomics Virtual Laboratory (GVL)

    11 Sep 2019

    The Genomics Virtual Laboratory (GVL) provides a cloud-based suite of genomics analysis tools for research and training.

  12. Genome Database for Rosaceae (GDR)

    11 Sep 2019

    The Genome Database for Rosaceae is a curated and integrated web-based relational database providing data mining tools and publicly available genomics, genetics and breeding data for Rosaceae (almond, apple, blackberry, cherry, peach, pear, plum, raspberry, rose, and...

  13. Oklahoma University Gateway

    11 Sep 2019

    The OU Cybergateway let users use well-known scientific applications like WRF, Gaussian, NWChem, Quantum Espresso, and others through a Web browser interface. Gateway users can keep track of their simulations’ metadata and output, and share with the team,...

  14. Center for Applied Internet Data Analysis (CAIDA)

    11 Sep 2019

    The Center for Applied Internet Data Analysis (CAIDA) conducts network research and builds research infrastructure to support large-scale data collection, curation, and data distribution to the scientific research community. The group, located at the federally funded...

  15. CloudLaunch

    11 Sep 2019

    CloudLaunch is an extensible application that can be used to launch virtual appliances of your choice on a public or private cloud. A virtual appliance is a virtual machine that packages a ready-to-run application(s), eliminating the need to install and configure...

  16. PlantingScience

    11 Sep 2019

    PlantingScience is a free online resource to teachers and schools. The program provides volunteer scientists, resources, and activities to support innovation in teaching, learning, and mentoring. Open education resources are shared for student-centered plant...

  17. HRGRN

    11 Sep 2019

    We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...

  18. SEAGrid

    11 Sep 2019

    The Science and Engineering Applications Grid (SEAGrid) empowers researchers to easily use scientific applications deployed across a wide range of supercomputers, campus clusters, and computing cloud. SEAGrid features both a powerful desktop client and go-anywhere...

  19. The Triticeae Toolbox (T3)

    11 Sep 2019

    T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data...

  20. VEP

    11 Sep 2019

    VEP (Variant Effect Predictor) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

  21. Aquavit

    11 Sep 2019

    The WV Aquavit collaboration portal, based on HUBzero, is a product of the Appalachian Freshwater Initiative (AFI) project funded by the National Science Foundation (NSF) through the EPSCoR RII Track 1 program [NSF Award 1458952]. It is a resource for research,...

  22. Vega

    11 Sep 2019

    Vega is a repository for high-quality gene models produced by the manual annotation of vertebrate genomes.

  23. Louisiana State University Computational Systems Biology Group

    11 Sep 2019

    Computational Systems Biology aims to develop and apply efficient algorithms to address critical scientific questions through computer simulations and theoretical modeling. The system-wide modeling is particularly relevant in modern biological sciences, where the key...

  24. Virtual Clusters for Community Computation

    11 Sep 2019

    VC3 is built from a number of software tools, technologies, and integrative experiences.

  25. CIPRES Portal for inference of large phylogenetic trees

    11 Sep 2019

    Cyberinfrastructure for Phylogenetic Research (CIPRES) project is an open collaboration funded by the National Science Foundation. The goal of the CIPRES project is to enable large-scale phylogenetic reconstructions. For more information please see www.phylo.org. We...