Louisiana State University Computational Systems Biology Group

09 May 2024

Computational Systems Biology aims to develop and apply efficient algorithms to address critical scientific questions through computer simulations and theoretical modeling. The system-wide modeling is particularly relevant in modern biological sciences, where the key...

Virtual Clusters for Community Computation

09 May 2024

VC3 is built from a number of software tools, technologies, and integrative experiences.

CIPRES Portal for inference of large phylogenetic trees

09 May 2024 | Science Gateways

Cyberinfrastructure for Phylogenetic Research (CIPRES) project is an open collaboration funded by the National Science Foundation. The goal of the CIPRES project is to enable large-scale phylogenetic reconstructions. For more information please see www.phylo.org. We...

USD Gateway

09 May 2024 | Science Gateways

This Science Gateway provides access to supercomputing resources without the complexity that often accompanies them. By using this site, you can focus on your computational research instead of fretting about complicated interfaces. The USD gateway is equipped to...

ENIGMA Bipolar Disorder: Brain Age Analysis Gateway

09 May 2024 | Science Gateways

The main purpose of this gateway is to gather data for analysis on how bi-polar impact human brain aging. The gateway feature includes user management, data sharing agreement, upload data files & validation, super-uploader, metadata graphs, combining all uploaded...

Drug Effect Database Gateway

09 May 2024 | Science Gateways

With assistance from the SGCI, we have developed a gateway which acts as an interface to a database of side effects resulting from single and multiple drug exposures. The side effects are computed via deep learning models which are designed to be computed on the Open...

ArrayExpress

09 May 2024 | Science Gateways

ArrayExpress Archive of Functional Genomics Data stores data from high-throughput functional genomics experiments, and provides these data for reuse to the research community.

Tripal

09 May 2024 | Science Gateways

Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database, and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content...

Apache Airavata

09 May 2024 | Science Gateways

Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.

QUBEShub

09 May 2024 | Science Gateways

To improve learning opportunities for all students enrolled in undergraduate biology courses by reflecting the centrality of quantitative approaches in modern biology.

CoGe(Comparative Genomics)

09 May 2024 | Science Gateways

CoGe is a platform for performing Comparative Genomics research. It provides an open-ended network of interconnected tools to manage, analyze, and visualize next-gen data.

COSMIC2 Science Gateway

09 May 2024 | Science Gateways

Structural biology is in the midst of a revolution. Instrumentation and software improvements have allowed for the full realization of cryo-electron microscopy (cryo-EM) as a tool capable of determining atomic structures of protein and macromolecular samples. These...

CitSci.org

09 May 2024 | Science Gateways

We support your citizen science. At CitSci.org, you create your own projects where trained volunteers and scientists together answer local, regional, and global questions, inform natural resource decisions, advance scientific understanding, and improve environmental...

Data Discovery Studio

09 May 2024 | Science Gateways

Data Discovery Studio indexes over 1.6 million geoscience resources from 40+ academic, government and international scientific data repositories and catalogs. It works across geoscience domains, letting users find the data they need via text-based, spatio-temporal...

Globus: Research data management simplified

09 May 2024 | Science Gateways

Globus is a secure, reliable research data management service. With Globus, you can move, share, publish & discover data via a single interface. Whether your files live on a supercomputer, lab cluster, tape archive, public cloud or your laptop, you can manage them...

Amos Gateway

09 May 2024 | Science Gateways

The overarching goal of the project is create a comprehensive cyberinfrastructure for the atomic, molecular, and optical science (AMOS) community where practitioners can access a synergistic, full-scope platform for computational AMOS. The developers...

CoMSES Net: Network for Computational Modeling in the Social and Ecological Sciences

09 May 2024 | Science Gateways

CoMSES Net is an international network of researchers, educators and professionals with the common goal of improving the way we develop, share, and use computational modeling in the social and ecological sciences. 

Jupyter Notebook

09 May 2024 | Science Gateways

The Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data...

CILogon

09 May 2024 | Science Gateways

CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...

Plant Genomics

09 May 2024 | Science Gateways

Plant genomics is a simple expansion of the scope of genomics at the National Center for Biotechnology Information (NCBI). NCBI provides the tools for storage of and analysis of nucleotide sequence such as, respectively, GenBank and BLAST and the capability to...

SimCCS Gateway

09 May 2024 | Science Gateways

SimCCS is a decision support tool for integrated assessment of carbon capture, utilization and storage technology developed by members of the U.S.-China Clean Energy Research Center, Advanced Coal Technology Consortium. SimCCS Gateway is a science gateway built from...

Coastal Emergency Risks Assessment (CERA)

09 May 2024 | Science Gateways

The Coastal Emergency Risks Assessment (CERA) group delivers storm surge and wave predictions for impending or active tropical cyclones in the United States. Based on the Advanced Circulation and Storm Surge model (ADCIRC), the CERA web mapping application provides...

Indiana Watershed Initiative

09 May 2024 | Science Gateways

A project where multiple partners are working to monitor the impacts of cover crops and two-stage drainage ditches on soil health and water quality in Indiana. Our overarching goal is to help farmers and landowners implement watershed-scale conservation practices...

Multiscale Complex Genomics (MuG) Virtual Research Environment

09 May 2024 | Science Gateways

The MuG Virtual Research Environment supports the expanding 3D/4D genomics community by developing tools to integrate the navigation in genomics data from sequence to 3D/4D chromatin dynamics data.

maizeGDB

09 May 2024 | Science Gateways

MaizeGDB (maize genetics and genomics database) is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.