Neotoma Paleoecology Database

09 May 2024

Neotoma Paleoecology Database and Community is an online hub for data, research, education, and discussion about paleoenvironments. Anyone with an Internet connection can access Neotoma.

Paleobiology Database (PBDB)

09 May 2024

The Paleobiology Database is a public database of paleontological data that anyone can use, maintained by an international non-governmental group of paleontologists. You can explore the data online in the Navigator, which lets you filter fossil occurrences by time,...

Social Media Macroscope

09 May 2024

The Social Media Macroscope is a project by University of Illinois Technology Services and the National Center for Supercomputing Applications (NCSA) with the goal of making social media data, analytics, and visualization tools accessible to researchers and students...

ODM2(Observations Data Model 2)

09 May 2024

ODM2 is an information model and supporting software ecosystem for feature-based earth observations, designed to facilitate interoperability across scientific disciplines and domain cyberinfrastructures. For example, a single ODM2 database can readily integrate...

Community Surface Dynamics Modeling System (CSDMS)

09 May 2024

CSDMS is an organization that promotes computational modeling of earth-surface processes by providing support for community, computing, and education. The Community Surface Dynamics Modeling System (CSDMS) deals with the Earth's surface - the ever-changing, dynamic...

BioFragment Database (BFDb)

09 May 2024

The BioFragment Database (BFDb) is an open-data platform for computational chemistry analysis of noncovalent interactions and collects >3000 bifragment contacts directly from biological systems.

DipCheck

09 May 2024

DipCheck is a validation tool for the evaluation of protein backbone geometry, developed by Joana Pereira and Victor Lamzin at the EMBL Hamburg. The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of the geometry of a 5-atom dipeptide unit:...

EcologyPlus

09 May 2024

Our Mission: EcologyPlus connects diverse college students and early career scientists with timely and relevant career opportunities and a community of peers and professionals in ecology and related careers across all sectors.What is EcologyPlus? ...

INTERACTIVE PARALLELIZATION TOOL (IPT)

09 May 2024

Interactive Parallelization Tool (IPT) assists domain-­experts and students in efficiently parallelizing their existing C/C++ applications using any of the following parallel programming models: Message Passing Interface (MPI), OpenMP, CUDA, and hybrid programming....

3DEM (3-D ELECTRON MICROSCOPY)

09 May 2024

A web-based research platform focused on developing and disseminating new technologies for enhanced resolution 3-dimensional electron microscopy.

Chem Compute

09 May 2024 | Science Gateways

The Chem Compute website allows students to easily access state of the art computational software for free. Our hope is that this will enable faculty to incorporate computational chemistry into their undergraduate teaching and research curriculum without the hassle...

MetaboLights

09 May 2024 | Science Gateways

MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and...

BRENDA

09 May 2024 | Science Gateways

BRENDA is the main collection of enzyme functional data available to the scientific community.

CAZY

09 May 2024 | Science Gateways

The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

IntAct Molecular Interaction Database

09 May 2024 | Science Gateways

IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.

IntEnz

09 May 2024 | Science Gateways

IntEnz (Integrated relational Enzyme database) is a freely available resource focused on enzyme nomenclature. IntEnz is created in collaboration with the Swiss Institute of Bioinformatics (SIB). This collaboration is responsible for the production of the ENZYME...

MicroScope

09 May 2024 | Science Gateways

MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.

Reactome

09 May 2024 | Science Gateways

REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...

Rhea

09 May 2024 | Science Gateways

Rhea is an expert curated resource of biochemical reactions designed for the annotation of enzymes and genome-scale metabolic networks and models.

UniProt

09 May 2024 | Science Gateways

The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information.

OMA

09 May 2024 | Science Gateways

The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.

Phylogeny.fr

09 May 2024 | Science Gateways

Phylogeny.fr has been designed to provide a high performance platform that transparently chains programs relevant to phylogenetic analysis in a comprehensive, and flexible pipeline. Although phylogenetic aficionados will be able to find most of their favorite tools...

MP-Complete

09 May 2024 | Science Gateways

The MP-Complete science gateway is a user-friendly, accessible platforms for researchers to perform first principles calculations on novel and existing materials. A key feature is its tight integration with the Materials Project (www.materialsproject.org), an open...

GISandbox

09 May 2024 | Science Gateways

GISandbox is a play place for researchers and educators to learn about, experiment with, and advance geographic information systems and science (GIS). GISandbox blends GIS and computing, which encompasses spatial analysis and modeling, agent-based models, as well as...

LegumeIP

09 May 2024 | Science Gateways

LegumeIP is an integrative database and bioinformatics platform for comparative genomics and transcriptomics to facilitate the study of gene function and genome evolution in legumes,to understand mechanisms that are fundamental to the legume species, especially the...