Virtual Clusters for Community Computation

09 May 2024

VC3 is built from a number of software tools, technologies, and integrative experiences.

CIPRES Portal for inference of large phylogenetic trees

09 May 2024

Cyberinfrastructure for Phylogenetic Research (CIPRES) project is an open collaboration funded by the National Science Foundation. The goal of the CIPRES project is to enable large-scale phylogenetic reconstructions. For more information please see www.phylo.org. We...

USD Gateway

09 May 2024

This Science Gateway provides access to supercomputing resources without the complexity that often accompanies them. By using this site, you can focus on your computational research instead of fretting about complicated interfaces. The USD gateway is equipped to...

ENIGMA Bipolar Disorder: Brain Age Analysis Gateway

09 May 2024

The main purpose of this gateway is to gather data for analysis on how bi-polar impact human brain aging. The gateway feature includes user management, data sharing agreement, upload data files & validation, super-uploader, metadata graphs, combining all uploaded...

Coherent X-ray Imaging Data Bank (CXIDB)

09 May 2024

Nowadays there are several groups around the world doing excellent work using different kinds of techniques all based on the physics of coherent X-ray imaging (CXI). Due to several reasons, including lack of a standard file format, there has been limited sharing of...

Drug Effect Database Gateway

09 May 2024

With assistance from the SGCI, we have developed a gateway which acts as an interface to a database of side effects resulting from single and multiple drug exposures. The side effects are computed via deep learning models which are designed to be computed on the Open...

PHARMACOLOGY

09 May 2024

One of the main aims is to provide a searchable database with quantitative information on drug targets and the prescription medicines and experimental drugs that act on them. The information in the database is presented at two levels: the initial view or landing...

ORCA (Open Resource Control Architecture)

09 May 2024

ORCA is a software framework and open-source platform for managing a programmatically controllable shared substrate, which may contain any combination of servers, storage, networks, or other components. This class of systems is often called cloud computing or utility...

ChEMBL

09 May 2024

ChEMBL is a database of bioactive drug-like small molecules, it contains 2-D structures, calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.) and abstracted bioactivities (e.g. binding constants, pharmacology and ADMET data). The data is...

Tripal

09 May 2024

Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database, and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content...

SUPER Project

09 May 2024

The Institute for Sustained Performance, Energy, and Resilience (SUPER) project is a broadly-based SciDAC institute with expertise in compilers and other system tools, performance engineering, energy management, and resilience. The goal of the project is to ensure...

MetalPDB

09 May 2024

MetalPDB collects and allows easy access to the knowledge on metal sites in biological macromolecules, starting from the structural information contained in the Protein Data Bank (PDB).

iRODS

09 May 2024

The Integrated Rule Oriented Data System, iRODS, is open source data management software designed to manage data sets that are big, important, and complex. Hundreds of organizations worldwide use iRODS to control their records and research data. ...

QUBEShub

09 May 2024

To improve learning opportunities for all students enrolled in undergraduate biology courses by reflecting the centrality of quantitative approaches in modern biology.

Earth Life Consortium (ELC)

09 May 2024

The Earth-Life Consortium (ELC) seeks to make all paleobiological data easily discoverable, accessible, and analyzable, with the larger goal of understanding the interactions between the Earth's biological and geophysical systems across all timescales of the Earth's...

COSMIC2 Science Gateway

09 May 2024

Structural biology is in the midst of a revolution. Instrumentation and software improvements have allowed for the full realization of cryo-electron microscopy (cryo-EM) as a tool capable of determining atomic structures of protein and macromolecular samples. These...

COSMIC2 Science Gateway

09 May 2024

Structural biology is in the midst of a revolution. Instrumentation and software improvements have allowed for the full realization of cryo-electron microscopy (cryo-EM) as a tool capable of determining atomic structures of protein and macromolecular samples. These...

Keycloak - Open Source Identity and Access Management

09 May 2024

Keycloak is an open source Identity and Access Management solution aimed at modern applications and services. It makes it easy to secure applications and services with little to no code.

ROBETTA - Full-chain Protein Structure Prediction Server

09 May 2024

Robetta provides both ab initio and comparative models of protein domains. Domains without a detectable PDB homolog are modeled with the Rosetta de novo protocol (Simons et al. (1997) J Mol Biol. 268:209-225, Bradley et al. (2005) Science 309 (5742), 1868-71)....

CitSci.org

09 May 2024

We support your citizen science. At CitSci.org, you create your own projects where trained volunteers and scientists together answer local, regional, and global questions, inform natural resource decisions, advance scientific understanding, and improve environmental...

Data Discovery Studio

09 May 2024

Data Discovery Studio indexes over 1.6 million geoscience resources from 40+ academic, government and international scientific data repositories and catalogs. It works across geoscience domains, letting users find the data they need via text-based, spatio-temporal...

Amos Gateway

09 May 2024

The overarching goal of the project is create a comprehensive cyberinfrastructure for the atomic, molecular, and optical science (AMOS) community where practitioners can access a synergistic, full-scope platform for computational AMOS. The developers...

OpenTopography

09 May 2024

OpenTopography facilitates community access to high-resolution, Earth science-oriented, topography data, and related tools and resources. OpenTopography is supported by the National Science Foundation under Award Numbers 1948997, 1948994 & 1948857.

CoMSES Net: Network for Computational Modeling in the Social and Ecological Sciences

09 May 2024

CoMSES Net is an international network of researchers, educators and professionals with the common goal of improving the way we develop, share, and use computational modeling in the social and ecological sciences. 

TAPIS

09 May 2024 | Science Gateways

The Tapis Framework provides a hosted, unified web-based API for securely managing computational workloads across institutions so that experts can focus on their research instead of the technology needed to accomplish it. The advanced computing infrastructure landscape has evolved tremendously...