WINGS

09 May 2024

WINGS is a semantic workflow system that assists scientists with the design of computational experiments. A computational experiment specifies how selected datasets are to be processed by a series of software components in a particular configuration. Earth scientists...

ARP/wARP 8.0

09 May 2024

ARP/wARP is a software project for automated protein model building and refinement. ARP/wARP combines pattern recognition-based interpretation of an electron density, its modelling as a hybrid model and a maximum likelihood parameter refinement with REFMAC.

SLATE and the Mobility of Capability

09 May 2024

SLATE (Services Layer at the Edge) is a new project that, when complete, will implement “cyberinfrastructure as code” by augmenting the canonical Science DMZ pattern with a generic, programmable, secure and trusted underlayment platform.

Open OnDemand

09 May 2024

Open OnDemand is an NSF-funded open-source HPC portal based on OSC’s original OnDemand portal. The goal of Open OnDemand is to provide an easy way for system administrators to provide web access to their HPC resources, including, but not limited to: ...

Materials Data Curation System

09 May 2024

The NIST Materials Data Curation System (MDCS) provides a means for capturing, sharing, and transforming materials data into a structured format that is XML based amenable to transformation to other formats. The data are organized using user-selected templates...

MetaboLights

09 May 2024

MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and...

BUSCO

09 May 2024

BUSCO v3 provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.

PHYLOViZ

09 May 2024

PHYLOViZ is a platform independent JAVA software that allows the analysis of sequence-based typing methods that generate allelic profiles and their associated epidemiological data.

Galaxy Software Framework

09 May 2024

Galaxy software framework is an open-source application. Its goal is to develop and maintain a system that enables researchers without informatics expertise to perform computational analyses through the web. A user interacts with Galaxy through the web by uploading...

NEWT(NERSC Web Toolkit)

09 May 2024

NEWT is bringing High Performance Computing (HPC) to the web through easy to write web applications. We think that writing applications for the web should be a simple task. We want to make HPC resources accessible and useful to scientists who are more comfortable...

ORCA (Open Resource Control Architecture)

09 May 2024

ORCA is a software framework and open-source platform for managing a programmatically controllable shared substrate, which may contain any combination of servers, storage, networks, or other components. This class of systems is often called cloud computing or utility...

OSiRIS - Open Storage Research Infrastructure

09 May 2024

OSiRIS has storage resources at Wayne State University, Michigan State University, and University of Michigan. We can store data spread across all three sites or target storage resources at a subset of the sites. The end goal is that researchers have a readily...

USQCD

09 May 2024

USQCD is a collaboration of US scientists developing and using large-scale computers for calculations in lattice quantum chromodynamics. Lattice QCD calculations allow us to understand the results of particle and nuclear physics experiments in terms of QCD, the...

RADICAL Cybertools

09 May 2024

RADICAL Cybertools is an abstractions-based suite of well-defined capabilities that are architected for scalable, interoperable and sustainable approaches to support science on a range of high-performance and distributed computing systems. It currently...

Cloudmesh Client Toolkit

09 May 2024

The cloudmesh client toolkit is a lightweight client interface of accessing heterogeneous clouds, clusters, and workstations right from the users computer. The user can manage his own set of resources he would like to utilize. Thus the user has the freedom to...

Tripal

09 May 2024

Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database, and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content...

Dataverse - Open source research data repository software

09 May 2024

Dataverse is an open source web application to share, preserve, cite, explore, and analyze research data. It facilitates making data available to others, and allows you to replicate others' work more easily. Researchers, journals, data authors, publishers, data...

Code Ocean

09 May 2024

Code Ocean is a cloud-based computational reproducibility platform that provides researchers and developers an easy way to share, discover and run code published in academic journals and conferences.

yt project

09 May 2024

yt is an open-source, permissively-licensed python package for analyzing and visualizing volumetric data. yt supports structured, variable-resolution meshes, unstructured meshes, and discrete or sampled data such as particles. Focused on driving physically-meaningful...

Einstein Toolkit

09 May 2024

The Einstein Toolkit is a community-driven software platform of core computational tools to advance and support research in relativistic astrophysics and gravitational physics. It aims to include any computational tool the fits into it's scope. Currently, a large...

SUPER Project

09 May 2024

The Institute for Sustained Performance, Energy, and Resilience (SUPER) project is a broadly-based SciDAC institute with expertise in compilers and other system tools, performance engineering, energy management, and resilience. The goal of the project is to ensure...

Apache Airavata

09 May 2024

Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.

The Bro Network Security Monitor

09 May 2024

Bro is a passive, open-source network traffic analyzer. It is primarily a security monitor that inspects all traffic on a link in depth for signs of suspicious activity. More generally, however, Bro supports a wide range of traffic analysis tasks even outside of the...

AtlanticWave-Software Defined Exchange (SDX)

09 May 2024

AtlanticWave-Software Defined Exchange (SDX) is a distributed intercontinental experimental SDX, supporting research, experimental deployments, prototyping and interoperability testing, on national and international scales.

DataConservancy (DC)

09 May 2024

The Data Conservancy (DC) was launched through a grant from the National Science Foundation’s DataNet program, which built upon prior experience with managing data from the Sloan Digital Sky Survey. The grant provided the DC team an opportunity to broaden its data...