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RepeatExplorer

Licensed according to this deed.

Category

Science Gateways

Published on

Abstract

RepeatExplorer is a computational pipeline designed to identify and characterize repetitive DNA elements in next generation sequencing data from plant and animal genomes. It employs graph-based clustering (Novak et al. 2010) of sequence reads to identify repetitive elements and a number of additional programs that aid in their annotation and quantification (Novak et al. 2013).

Site

http://repeatexplorer.org/

Users

zweidner

Cite this work

Researchers should cite this work as follows:

  • (2024), "RepeatExplorer," https://sciencegateways.org/resources/repeatexplorer.

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