sRNA Plant Portal
Licensed according to this deed.
Category
Published on
Abstract
The plant sRNA portal is an online resource integrating a workflow for identifying, predicting and annotating plant small RNAs (sRNA), and a database to store sRNA datasets with standardized metadata. The workflow (miRPursuit) is based on publicly available tools and allows the automated sequential application of data processing modules for analysis of sRNA datasets, including data preprocessing, filtering, annotation and reporting output. Additionally, tools for downstream analysis, such as expression matrix and prediction of sRNA target genes are integrated in the workflow. The database will work as a repository of the miRPursuit annotated sRNAs and other publicly available sRNAs, focusing mainly on woody plant data.
Site
Sponsors
Software
Github:sRNA-Plant-Portal: https://github.com/forestbiotech-lab/sRNA-Portal-workflow
Users
Cite this work
Researchers should cite this work as follows: