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Custos Admin Gateway
26 Jun 2024 |
Custos provides security services, including identity management, authorization management, and resource credential management, for science gateways
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EDGE-Bioinformatics-Gateway
26 Jun 2024 |
The EDGE Bioinformatics Science Gateway was developed to help biologists, educators and public-health professionals process Next Generation Sequencing data (in the form of raw FASTQ files), even if they have little to no bioinformatics expertise. EDGE is a highly integrated and interactive...
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CyberWater
26 Jun 2024 |
To tackle fundamental scientific questions regarding health, resilience, and sustainability of water resources that encompass hydrological, biological, environmental, atmospheric, and other geosciences that define the Earth system, researchers need to be able to easily access diverse data...
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Biolearns
26 Jun 2024 |
To further facilitate the general needs of online real-time co-expression analysis, we develop biolearns, a python-based co-expression network analysis web tool.
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Future Water Indiana
26 Jun 2024 |
This project is part of Indiana University's Grand Challenges Prepared for Environmental Change project. For this project, we are building a computer-based watershed model of the Wabash River Basin. This model will be used to investigate climate change impacts on water resources in Indiana....
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GEO-ABM for Analysis of COVID-19 Transmission
26 Jun 2024 |
This gateway helps schools and school districts understand the risks of COVID-19 transmission in schools and the potential effects of non-pharmaceutical interventions using a spatiallly-explicit agent-based model
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Global Floods Monitoring
26 Jun 2024 |
"We are researchers from the approved project ASC190069: Deep Convolutional Neural Network based Learning of Disaster Induced Changes in Remote Sensing Images. With our ongoing progress and success in using the Bridges2-GPU-AI infrastructure, we are planning to develop a science gateway...
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High-Resolution Modeling of Hydrodynamic Experiments with UltraScan
26 Jun 2024 |
This XSEDE ACCESS portal provides access to the high performance computing back-end of UltraScan (https://www.ultrascan.aucsolutions.comuthscsa.edu) which is used to analyze analytical ultracentrifugation experiments by high-resolution methods. Users can request an individual database instance...
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Metaproteomics Gateway
26 Jun 2024 |
Galaxy-P platform offers an open source, bioinformatics platform for disseminating metaproteomics software and workflows. This was a result of metaproteomics contribution-fest (z.umn.edu/mphack2016) which generated easily accessible and documented metaproteomic software tools and workflows. The...
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Microbial Genomes Atlas
26 Jun 2024 |
The Microbial Genomes Atlas –MiGA– processes Prokaryotic genomes (draft or complete), applies different quality checks, and identifies the closest relatives in public databases using a combination of genome-wide identity metrics such as the average nucleotide identity (ANI) and the...
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Open Knowledge of Interatomic Models
26 Jun 2024 |
The Open Knowledgebase of Interatomic Models (OpenKIM) is an interatomic potential repository and an online framework for making molecular simulations reliable, reproducible, and portable. Computer implementations of interatomic models are archived in OpenKIM, verified for coding integrity, and...
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Plasma Science Virtual Laboratory
26 Jun 2024 |
The Plasma Science Virtual Laboratory (VLab) is the gateway that drives the Gkeyll workflow executions on a wide range of HPC systems. The VLab is deployed with hosted gateway platform SciGaP, using Apache Airavata middleware as the underlying middleware that provides gateways. Gkeyll is a...
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Proteogenomics Gateway
26 Jun 2024 |
This page provides links to instructional materials describing how to access and use the proteogenomic workflows described in the manuscript text. Please access the links indicated below for the following materials: Training on usegalaxyp.org How to access and use the usegalaxyp.org training...
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Providing a Neuroscience Gateway
26 Jun 2024 |
The Neuroscience Gateway (NSG) is an open project funded by the National Science Foundation and developed by researchers from UCSD and Yale University. The NSG (www.nsgportal.org) is a software infrastructure that allows computational neuroscience researchers and students to easily utilize HPC...
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Searching the SRA
26 Jun 2024 |
Searching the SRA provides a gateway for researchers to explore sequence data from publicly available metagenomics projects in the Sequence Read Archive, You can upload a DNA or protein query sequence, and quickly scan for the presence of that sequence in over 100,000 freely available datasets...
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Snow Vision
26 Jun 2024 |
Our team of archaeologists, computer scientists, and digital humanists unites outstanding problems in art and archaeology and cutting-edge computer-vision research – an example of digital humanities par excellence – to automate the matching of stamped pottery sherds in order to...
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Visualizing Statistical Concepts: A collection of tools for emerging music education researchers
26 Jun 2024 |
"I created a virtual machine with the statistical program R installed. R is a free, open-source statistical computing and graphics language and is a flexible platform for organizing, visualizing, and analyzing data. The web applications accessible from the page were built with an...
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Apache Airvata Testdrive Gateway
24 Jun 2024 |
The Airavata Django Portal is a web interface to the Apache Airavata API implemented using the Django web framework. The intention is that the Airavata Django Portal can be used as is for a full featured web based science gateway but it can also be customized through various plugins...
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Network for Computational Nanotechnology and nanoHUB
09 May 2024 |
The Network for Computational Nanotechnology (NCN) has a mission to connect theory, experiment, and computation in a way that will transform nanoscience into nanotechnology. While addressing challenges in the field, NCN researchers produce new algorithms, approaches,...
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Chem Compute
09 May 2024 |
The Chem Compute website allows students to easily access state of the art computational software for free. Our hope is that this will enable faculty to incorporate computational chemistry into their undergraduate teaching and research curriculum without the hassle...
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GenePattern
09 May 2024 |
GenePattern is a powerful genomic analysis platform that provides access to hundreds of tools for gene expression analysis, proteomics, SNP analysis, flow cytometry, RNA-seq analysis, and common data processing tasks. A web-based interface provides easy access to...
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Galaxy Software Framework
09 May 2024 |
Galaxy software framework is an open-source application. Its goal is to develop and maintain a system that enables researchers without informatics expertise to perform computational analyses through the web. A user interacts with Galaxy through the web by uploading...
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GISandbox
09 May 2024 |
GISandbox is a play place for researchers and educators to learn about, experiment with, and advance geographic information systems and science (GIS). GISandbox blends GIS and computing, which encompasses spatial analysis and modeling, agent-based models, as well as...
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MP-Complete
09 May 2024 |
The MP-Complete science gateway is a user-friendly, accessible platforms for researchers to perform first principles calculations on novel and existing materials. A key feature is its tight integration with the Materials Project (www.materialsproject.org), an open...
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WaterHUB - Platform for water education, research, data access, partnership and collaboration
09 May 2024 |
WaterHUB is an open platform for connecting hydrologists through sharing of hydrologic information, data, models, and simulation tools, connecting researchers and students to high-performance computation and data resources, and connecting science and people through...