Sci-GaIA

09 May 2024

Sci-GaiA aims at creating a sustainable foundation of educational materials and procedures for the development and management of Science Gateways and e–Infrastructures in Africa and beyond.

CAVER

09 May 2024

CAVER is a software tool for analysis and visualization of tunnels and channels in protein structures. CAVER provides rapid, accurate and fully automated calculation of tunnels and channels in static and dynamic structures. The molecules amendable to analysis of...

ARIADNE

09 May 2024

ARIADNEPlus Gateway helps the project to develop a data infrastructure embedded in a cloud that offer the availability of Virtual Research Environments where data-based archaeological research may be carried out. The project will furthermore develop a Linked Data...

GENI (Global Environment for Network Innovations)

09 May 2024

GENI (Global Environment for Network Innovations) provides a virtual laboratory for networking and distributed systems research and education. It is well suited for exploring networks at scale, thereby promoting innovations in network science, security, services and...

Brain Life

09 May 2024

We are developing an open, online platform to provide a seamless access to cloud computing infrastructure and brain data and data derivatives. This platform is meant to reach out beyond neuroscience, allowing also computer scientists, statisticians and engineers...

National Consortium for Data Science (NCDS)

09 May 2024

The National Consortium for Data Science (NCDS) is a collaboration of leaders in academia, industry, and government formed to address the data challenges and opportunities of the 21st century. The NCDS helps members take advantage of data in ways that result in new...

National Data Service

09 May 2024

The National Data Service is an emerging vision of how scientists and researchers across all disciplines can find, reuse, and publish data. It is an international federation of data providers, data aggregators, community-specific federations, publishers, and...

SETTER

09 May 2024

The web-server utilizes SETTER (SEcondary sTructure-based TERtiary Structure Similarity Algorithm) method for fast and accurate structural pairwise alignment. The efficiency of the algorithm is given by the decomposition of the RNA structure into the set of...

Tropical Ecology Assessment and Monitoring (TEAM) Network

09 May 2024

The idea behind TEAM is deceptively simple: to measure and compare plants, terrestrial mammals, ground-dwelling birds and climate using a standard methodology in a range of tropical forests, from relatively pristine places to those most affected by people. TEAM...

CRISPRs web server

09 May 2024

CRISPRs web server acts as a gateway to publicly accessible CRISPRs database and software. It enables the easy detection of CRISPRs in locally-produced data and consultation of CRISPRs present in the database. It also gives information on the presence of...

ExoGENI

09 May 2024

ExoGENI is a new GENI testbed that links GENI to two advances in virtual infrastructure services outside of GENI: open cloud computing (OpenStack) and dynamic circuit fabrics. ExoGENI orchestrates a federation of independent cloud sites located across the US and...

The Dundee Resource for Sequence Analysis and Structure Prediction

09 May 2024

This resource includes sequence pipeline (TarO) analysis, a secondary prediction (JPred) structure server, and a protein kinase database and kinase classification pipeline (Kinomer).

USQCD

09 May 2024

USQCD is a collaboration of US scientists developing and using large-scale computers for calculations in lattice quantum chromodynamics. Lattice QCD calculations allow us to understand the results of particle and nuclear physics experiments in terms of QCD, the...

HotSpot Wizard

09 May 2024

Design of mutations and smart libraries in protein engineering.

IMGT®, the international ImMunoGeneTics information system

09 May 2024

IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org, is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université de Montpellier and CNRS). IMGT® is a high-quality integrated knowledge...

SpotOn

09 May 2024

SpotOn is a robust algorithm developed to identify and classify the interfacial residues as Hot-Spots (HS) and Null-Spots (NS) with a final accuracy of 0.95 and a sensitivity of 0.95 on an independent test set. The predictor was developed using an ensemble learning...

ProteinAtlas

09 May 2024

Maps all the human proteins in cells, tissues and organs using integration of various omics technologies, including antibody-based imaging, mass spectrometry-based proteomics, transcriptomics and systems biology. All the data in the knowledge resource...

AtomicChargeCalculator

09 May 2024

AtomicChargeCalculator (ACC) is a complex yet intuitive utility for the calculation, visualization and analysis of atomic charges for small drug­like molecules, as well as for large biomolecular complexes. Up to thousands molecules can be processed in one run....

RADICAL Cybertools

09 May 2024

RADICAL Cybertools is an abstractions-based suite of well-defined capabilities that are architected for scalable, interoperable and sustainable approaches to support science on a range of high-performance and distributed computing systems. It currently...

Auto-Rickshaw

09 May 2024

The EMBL-Hamburg automated crystal structure determination platform is a system which contains several distinct decision-makers which executes a number of macromolecular crystallographic software programs to produce a software pipeline for automated and efficient...

Trinity CTAT Galaxy

09 May 2024

The Trinity Cancer Transcriptome Analysis Toolkit (CTAT) aims to provide tools for leveraging RNA-Seq to gain insights into the biology of cancer transcriptomes. Bioinformatics tool support is provided for mutation detection, fusion transcript identification, de novo...

Scipion

09 May 2024

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute...

MotiveValidator

09 May 2024

MotiveValidator is a platform for a set of applications designed to help you determine whether a residue or a ligand in a biomolecule or biomolecular complex is structurally complete and correctly annotated according to its models stored in the wwPDB Chemical...

Cloudmesh Client Toolkit

09 May 2024

The cloudmesh client toolkit is a lightweight client interface of accessing heterogeneous clouds, clusters, and workstations right from the users computer. The user can manage his own set of resources he would like to utilize. Thus the user has the freedom to...

Language Applications (LAPPS) Grid

09 May 2024

The LAPPS Grid is a framework for text analysis and text mining. It provides seamless access to a wide range of Natural Language Processing (NLP) tools and resources (e.g., popular public tools such as StanfordNLP, OpenNLP, NLTK, LingPipe),as well as a state-...