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  1. ProteinAtlas

    09 May 2024

    Maps all the human proteins in cells, tissues and organs using integration of various omics technologies, including antibody-based imaging, mass spectrometry-based proteomics, transcriptomics and systems biology. All the data in the knowledge resource...

  2. AtomicChargeCalculator

    09 May 2024

    AtomicChargeCalculator (ACC) is a complex yet intuitive utility for the calculation, visualization and analysis of atomic charges for small drugĀ­like molecules, as well as for large biomolecular complexes. Up to thousands molecules can be processed in one run....

  3. RADICAL Cybertools

    09 May 2024

    RADICAL Cybertools is an abstractions-based suite of well-defined capabilities that are architected for scalable, interoperable and sustainable approaches to support science on a range of high-performance and distributed computing systems. It currently...

  4. Auto-Rickshaw

    09 May 2024

    The EMBL-Hamburg automated crystal structure determination platform is a system which contains several distinct decision-makers which executes a number of macromolecular crystallographic software programs to produce a software pipeline for automated and efficient...

  5. Trinity CTAT Galaxy

    09 May 2024

    The Trinity Cancer Transcriptome Analysis Toolkit (CTAT) aims to provide tools for leveraging RNA-Seq to gain insights into the biology of cancer transcriptomes. Bioinformatics tool support is provided for mutation detection, fusion transcript identification, de novo...

  6. Scipion

    09 May 2024

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute...

  7. MotiveValidator

    09 May 2024

    MotiveValidator is a platform for a set of applications designed to help you determine whether a residue or a ligand in a biomolecule or biomolecular complex is structurally complete and correctly annotated according to its models stored in the wwPDB Chemical...

  8. Cloudmesh Client Toolkit

    09 May 2024

    The cloudmesh client toolkit is a lightweight client interface of accessing heterogeneous clouds, clusters, and workstations right from the users computer. The user can manage his own set of resources he would like to utilize. Thus the user has the freedom to...

  9. Language Applications (LAPPS) Grid

    09 May 2024

    The LAPPS Grid is a framework for text analysis and text mining. It provides seamless access to a wide range of Natural Language Processing (NLP) tools and resources (e.g., popular public tools such as StanfordNLP, OpenNLP, NLTK, LingPipe),as well as a state-...

  10. European Genome-phenome Archive (EGA)

    09 May 2024

    The European Genome-phenome Archive (EGA) is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA provides a service for the permanent archiving and...

  11. The USA National Phenology Network (USA-NPN)

    09 May 2024

    The USA National Phenology Network was established in 2007 to collect, store, and share phenology data and information. It supports science, natural resource management, and communication by providing data, tools, and resources and by connecting people. It consists...

  12. ArrayExpress

    09 May 2024

    ArrayExpress Archive of Functional Genomics Data stores data from high-throughput functional genomics experiments, and provides these data for reuse to the research community.

  13. OpenAIRE

    09 May 2024

    OpenAIRE-Connect aims to provide technological and social bridges, and deliver services enabling uniform exchange of research artefacts (literature, data, and methods), with semantic links between them, across research communities and content providers in scientific...

  14. InterMine

    09 May 2024

    InterMine integrates biological data sources, making it easy to query and analyse data.

  15. XDMoD: Comprehensive HPC System Management Tool

    09 May 2024

    The XDMoD (XD Metrics on Demand) tool provides HPC center personnel and senior leadership with the ability to easily obtain detailed operational metrics of HPC systems coupled with extensive analytical capability to optimize performance at the system and job level,...

  16. Primer3web

    09 May 2024

    Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed.

  17. Tripal

    09 May 2024

    Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database, and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content...

  18. Crops in silico

    09 May 2024

    Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...

  19. Dataverse - Open source research data repository software

    09 May 2024

    Dataverse is an open source web application to share, preserve, cite, explore, and analyze research data. It facilitates making data available to others, and allows you to replicate others' work more easily. Researchers, journals, data authors, publishers, data...

  20. Expression Atlases

    09 May 2024

    The atlases provide a spatio-temporal framework capturing knowledge of embryo development, staging and anatomy as well as a significant volume of curated gene-expression and related data (~40K individual assays) made available via web-based query and browse...

  21. Code Ocean

    09 May 2024

    Code Ocean is a cloud-based computational reproducibility platform that provides researchers and developers an easy way to share, discover and run code published in academic journals and conferences.

  22. Europe PMC

    09 May 2024

    Europe PMC is a repository, providing access to worldwide life sciences articles, books, patents and clinical guidelines. Europe PMC provides links to relevant records in databases such as Uniprot, European Nucleotide Archive (ENA), Protein Data Bank Europe (PDBE)...

  23. Yeastract

    09 May 2024

    YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of approximately 163000 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1600...

  24. yt project

    09 May 2024

    yt is an open-source, permissively-licensed python package for analyzing and visualizing volumetric data. yt supports structured, variable-resolution meshes, unstructured meshes, and discrete or sampled data such as particles. Focused on driving physically-meaningful...

  25. Brain Image Library (BIL)

    09 May 2024

    The Brain Image Library (BIL) is a national public resource enabling researchers to deposit, analyze, mine, share and interact with large brain image datasets. BIL encompasses the deposition of datasets, the integration of datasets into a searchable web-accessible...