European Genome-phenome Archive (EGA)

09 May 2024

The European Genome-phenome Archive (EGA) is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA provides a service for the permanent archiving and...

The USA National Phenology Network (USA-NPN)

09 May 2024

The USA National Phenology Network was established in 2007 to collect, store, and share phenology data and information. It supports science, natural resource management, and communication by providing data, tools, and resources and by connecting people. It consists...

ArrayExpress

09 May 2024

ArrayExpress Archive of Functional Genomics Data stores data from high-throughput functional genomics experiments, and provides these data for reuse to the research community.

OpenAIRE

09 May 2024

OpenAIRE-Connect aims to provide technological and social bridges, and deliver services enabling uniform exchange of research artefacts (literature, data, and methods), with semantic links between them, across research communities and content providers in scientific...

InterMine

09 May 2024

InterMine integrates biological data sources, making it easy to query and analyse data.

XDMoD: Comprehensive HPC System Management Tool

09 May 2024

The XDMoD (XD Metrics on Demand) tool provides HPC center personnel and senior leadership with the ability to easily obtain detailed operational metrics of HPC systems coupled with extensive analytical capability to optimize performance at the system and job level,...

Primer3web

09 May 2024

Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed.

Tripal

09 May 2024

Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database, and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content...

Crops in silico

09 May 2024

Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...

Dataverse - Open source research data repository software

09 May 2024

Dataverse is an open source web application to share, preserve, cite, explore, and analyze research data. It facilitates making data available to others, and allows you to replicate others' work more easily. Researchers, journals, data authors, publishers, data...

Expression Atlases

09 May 2024

The atlases provide a spatio-temporal framework capturing knowledge of embryo development, staging and anatomy as well as a significant volume of curated gene-expression and related data (~40K individual assays) made available via web-based query and browse...

Code Ocean

09 May 2024

Code Ocean is a cloud-based computational reproducibility platform that provides researchers and developers an easy way to share, discover and run code published in academic journals and conferences.

Europe PMC

09 May 2024

Europe PMC is a repository, providing access to worldwide life sciences articles, books, patents and clinical guidelines. Europe PMC provides links to relevant records in databases such as Uniprot, European Nucleotide Archive (ENA), Protein Data Bank Europe (PDBE)...

Yeastract

09 May 2024

YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of approximately 163000 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1600...

yt project

09 May 2024

yt is an open-source, permissively-licensed python package for analyzing and visualizing volumetric data. yt supports structured, variable-resolution meshes, unstructured meshes, and discrete or sampled data such as particles. Focused on driving physically-meaningful...

Brain Image Library (BIL)

09 May 2024

The Brain Image Library (BIL) is a national public resource enabling researchers to deposit, analyze, mine, share and interact with large brain image datasets. BIL encompasses the deposition of datasets, the integration of datasets into a searchable web-accessible...

Einstein Toolkit

09 May 2024

The Einstein Toolkit is a community-driven software platform of core computational tools to advance and support research in relativistic astrophysics and gravitational physics. It aims to include any computational tool the fits into it's scope. Currently, a large...

SUPER Project

09 May 2024

The Institute for Sustained Performance, Energy, and Resilience (SUPER) project is a broadly-based SciDAC institute with expertise in compilers and other system tools, performance engineering, energy management, and resilience. The goal of the project is to ensure...

Apache Airavata

09 May 2024

Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.

Hep C Calculator

09 May 2024

Hep C Calculator is an interactive tool developed to evaluate the cost-effectiveness of DAAs for the treatment of HCV globally. The tool utilizes a mathematical model to simulate the life course of HCV-infected populations in 28 countries (considered as priority...

LiceBase

09 May 2024

LiceBase is a database for sea lice genomics. LiceBase provides the genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, Blast functionality and access to related high-thoughput genomics data. Sea lice...

MetaNetX

09 May 2024 | Science Gateways

MetaNetX is a repository of genome-scale metabolic networks (GSMNs) and biochemical pathways from a number of major resources imported into a common namespace of chemical compounds, reactions, cellular compartments - namely MNXref - and proteins. The MetaNetX.org...

neXtProt

09 May 2024 | Science Gateways

An innovative knowledge platform dedicated to human proteins. It contains a wealth of data on all the human proteins that are produced by the 20'000 protein- coding genes found in the human genome.

Expression Atlas

09 May 2024 | Science Gateways

Expression Atlas is an open science resource that gives users a powerful way to find information about gene and protein expression across species and biological conditions such as different tissues, cell types, developmental stages and diseases among...

The Bro Network Security Monitor

09 May 2024 | Science Gateways

Bro is a passive, open-source network traffic analyzer. It is primarily a security monitor that inspects all traffic on a link in depth for signs of suspicious activity. More generally, however, Bro supports a wide range of traffic analysis tasks even outside of the...