AquaMaps

09 May 2024

AquaMaps is a tool for generating model-based, large-scale predictions of natural occurrences of species. For marine species, the model uses estimates of environmental preferences with respect to depth, water temperature, salinity, primary productivity, and...

TreeGenes

09 May 2024

TreeGenes is a collection of forest tree genome databases and other forest genetic information resources for the international forest genetics community. Dendrome is part of a larger collaborative effort to construct genome databases for major crop and forest...

Computational Chemistry Grid (GridChem)

09 May 2024

GridChem is a virtual organization that provides a computational chemistry Grid to the chemistry user community which is just gotten to production and we are exploring expansion of the scope in terms of resources and applications supported. Please see the various...

WIFIRE

09 May 2024

The WIFIRE CI integrates networked observations, e.g., heterogeneous satellite data and real-time remote sensor data, with computational techniques in signal processing, visualization, modeling and data assimilation to provide a scalable, technological, and...

GenSAS

09 May 2024

The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and...

FORTRAN.io

09 May 2024

Fortran.io is an MVC web stack written in Fortran 90.

ORCA(Quantum Chemistry Program)

09 May 2024

The program ORCA is a modern electronic structure program package. ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of...

BamBam

09 May 2024 | Tools

BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...

OpenDreamKit

09 May 2024 | Science Gateways

OpenDreamKit (Open Digital Research Environment Toolkit) will deliver a flexible toolkit enabling research groups to set up Virtual Research Environments, customised to meet the varied needs of research projects in pure mathematics and applications, and supporting...

maizeGDB

09 May 2024 | Science Gateways

MaizeGDB (maize genetics and genomics database) is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.

metastudio

09 May 2024 | Science Gateways

A platform evolving as an online academy for collaborative learning with a focus on the culture of learning as against content for learning. This platform is being made and maintained by the gnowledge lab of Homi Bhabha Centre for Science Education, Tata Institute of...

Genomicus

09 May 2024 | Science Gateways

Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in...

SBGrid Data Bank

09 May 2024 | Science Gateways

The SBGrid Data Bank is an open source research data management system enabling Structural Biologists to preserve x-ray diffraction data and to make it accessible to the broad research community. Driven by SBGrid’s community focused spirit, the Data Bank aims to...

NeuroMorpho.Org

09 May 2024 | Science Gateways

NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications. It contains contributions from over 300 laboratories worldwide and is continuously updated as new morphological reconstructions are...

Sage Bionetworks

09 May 2024 | Science Gateways

Sage Bionetworks is a non-profit research organization that seeks to develop predictors of disease and accelerate health research through the creation of open systems, incentives, and standards. We create strategies and platforms that empower researchers to share and...

EU-Brazil OpenBio

09 May 2024 | Science Gateways

EUBrazilOpenBio aims to ambitiously combine the Biodiversity Science and the Open Access Movement, promoting the concept of the openness for scientific research. The project will deploy an open-access platform from the federation and integration of existing European...

VI-SEEM

09 May 2024 | Science Gateways

VI-SEEM aims at creating a unique Virtual Research Environment (VRE) in Southeast Europe and the Eastern Mediterranean (SEEM), with special focus on the scientific communities of Life Sciences, Climatology and Digital Cultural Heritage.

CyberGIS Gateway

09 May 2024 | Science Gateways

Geographic information is collected to support scientific investigations and decision-making in a wide variety of application domains (e.g., environment science, transportation, public health, and business). Enormous computational resources are needed to store and...

Flotilla: An Open-Source Toolkit for Single-Cell RNA-Seq Data Analysis

09 May 2024 | Science Gateways

flotilla is a Python package for visualizing transcriptome (RNA expression) data from hundreds of samples.

NGSEP (Next Generation Sequencing Eclipse Plugin)

09 May 2024 | Science Gateways

NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. NGSEP also...

Simiode

09 May 2024 | Science Gateways

An open community of teachers and learners using modeling first differential equations in an original way.

Q-bank

09 May 2024 | Science Gateways

Q-bank offers descriptions of well characterized regulated plants pests. It comprises ecological, morphological, physiological, and sequence data of items that are available in physical collections of plantpathogenic bacteria, fungi, insects, nematodes, phytoplasmas,...

Genomics Virtual Laboratory (GVL)

09 May 2024 | Science Gateways

The Genomics Virtual Laboratory (GVL) provides a cloud-based suite of genomics analysis tools for research and training.

Ethics Core Digital Library

09 May 2024 | Science Gateways

Our web site is powered by the HUBzero software developed at Purdue University. HUBzero was specifically designed to help a scientific community share resources and work together with one another. Users can upload their own content--including tutorials, courses,...

Pistoia Alliance

09 May 2024 | Science Gateways

We are a global, not-for-profit alliance of life science companies, vendors, publishers, and academic groups that work together to lower barriers to innovation in R&D. Our projects transform R&D innovation through pre-competitive collaboration. We bring together the...