INCA: Monitoring Tool

09 May 2024

Determining whether a Grid is up in the face of complex Grid software deployments can be difficult and depends on the types of applications and users that utilize it. By detailing a set of software, services, and features that should be available on a Grid in a...

REDCap (Research Electronic Data Capture)

09 May 2024

REDCap (Research Electronic Data Capture) is a secure web application for building and managing online surveys and databases. While REDCap can be used to collect virtually any type of data (including 21 CFR Part 11, FISMA, and HIPAA-compliant environments), it is...

European Variation Archive

09 May 2024

The European Variation Archive is an open-access database of all types of genetic variation data from all species.

iMarine

09 May 2024

This gateway is an access point to a number of Virtual Research Environments deployed and operated in the context of the past iMarine EU FP7 project to support the Ecosystem Approach to fisheries management and conservation of marine living resources. It empowers...

Pegasus

09 May 2024

The Pegasus project encompasses a set of technologies that help workflow-based applications execute in a number of different environments including desktops, campus clusters, grids, and clouds. Pegasus bridges the scientific domain and the execution environment by...

HAMAP

09 May 2024

HAMAP is a system for the classification and functional annotation of protein sequences. It consists of a collection of expert curated family profiles for protein classification and associated rules for protein annotation.

NIST Materials Resource Registry (NMRR)

09 May 2024

This system allows for the registration of materials resources, bridging the gap between existing resources and the end users. The Materials Resource Registry functions as a centrally located service, making the registered information available for research to the...

Orphanet

09 May 2024

Orphanet is a unique resource, gathering and improving knowledge on rare diseases so as to improve the diagnosis, care and treatment of patients with rare diseases. Orphanet aims to provide high-quality information on rare diseases, and ensure equal access to...

EGI Applications Database(AppDB)

09 May 2024

The EGI Applications Database (AppDB) is a central service that stores and provides to the public information about: 1) software solutions in the form of native software products, virtual appliances and/or software appliances, 2) the programmers and the scientists...

GeoNode

09 May 2024

GeoNode is a web-based application and platform for developing geospatial information systems (GIS) and for deploying spatial data infrastructures (SDI).

Neotoma Paleoecology Database

09 May 2024

Neotoma Paleoecology Database and Community is an online hub for data, research, education, and discussion about paleoenvironments. Anyone with an Internet connection can access Neotoma.

CAMEO (Continuous Automated Model EvaluatiOn)

09 May 2024

CAMEO continuously applies quality assessment criteria established by the protein structure prediction community. Since the accuracy requirements for different scientific applications vary, there is no "one fits all" score. CAMEO therefore offers a variety of scores...

PROSITE

09 May 2024

PROSITE consists of entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them. PROSITE is a key element of the UniProt annotation pipeline “UniRule”.

IMMUNOPHARMACOLOGY

09 May 2024

The Guide to IMMUNOPHARMACOLOGY (GtoImmuPdb) is a Wellcome Trust-funded extension to the existing Guide to PHARMACOLOGY (GtoPdb). The development of GtoImmuPdb aims to provide improved data exchange between immunology and pharmacology expert communities, so to better...

Paleobiology Database (PBDB)

09 May 2024

The Paleobiology Database is a public database of paleontological data that anyone can use, maintained by an international non-governmental group of paleontologists. You can explore the data online in the Navigator, which lets you filter fossil occurrences by time,...

WebPlotViz: Browser based Visualization tool

09 May 2024

WebPlotViz is a 3D data point browser that visualizes large volume of 3-dimensional data as points in a virtual space on web browser and enable users to explore the virtual space interactively. Used together with dimension reduction algorithms such as MDS, WebPlotViz...

SoyBase

09 May 2024

SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...

HADDOCK (High Ambiguity Driven protein-protein DOCKing)

09 May 2024

HADDOCK (High Ambiguity Driven protein-protein DOCKing) is an information-driven flexible docking approach for the modeling of biomolecular complexes. HADDOCK distinguishes itself from ab-initio docking methods in the fact that it encodes information from identified...

IPUMS TERRA

09 May 2024

Our understanding of interactions between population and environment has been hampered by differences in the data structures and analysis methods and tools used within different disciplines, as well as a dearth of internationally comparable data. Closely integrating...

Social Media Macroscope

09 May 2024

The Social Media Macroscope is a project by University of Illinois Technology Services and the National Center for Supercomputing Applications (NCSA) with the goal of making social media data, analytics, and visualization tools accessible to researchers and students...

SASSIE-web

09 May 2024

SASSIE-web is a program suite to enable researchers to build structures, perform Monte Carlo and molecular dynamics simulations, calculate neutron and x-ray small-angle scattering and reflectivity data on a wide variety of soft-matter systems. Utilities are provided...

ODM2(Observations Data Model 2)

09 May 2024

ODM2 is an information model and supporting software ecosystem for feature-based earth observations, designed to facilitate interoperability across scientific disciplines and domain cyberinfrastructures. For example, a single ODM2 database can readily integrate...

Human Endogenous Retrovirus Database

09 May 2024

Endogenous retroviruses (ERVs) are present in the genomes of practically all vertebrates, as a consequence of infiltration of the host germline lineages by circulating exogenous viruses. A typical mammalian genome contains tens to hundreds of thousands of ERV...

Skyline

09 May 2024

Skyline is a freely-available, open-source Windows client application for building Selected Reaction Monitoring (SRM) / Multiple Reaction Monitoring (MRM), Parallel Reaction Monitoring (PRM), DIA/SWATH and targeted DDA quantitative methods and analyzing the resulting...

Chemical Entities of Biological Interest (ChEBI)

09 May 2024

Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. The term ‘molecular entity’ refers to any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical,...