Purdue Community Hub

09 May 2024

Purdue's ITaP Research Computing division collaborates with many research groups across campus and endeavors to provide access to leading-edge computational and data storage systems.

PURR

09 May 2024

The Purdue University Research Repository (PURR) is a research collaboration and data management solution for Purdue researchers and their collaborators. PURR allows you to collaborate on research andThe Purdue University Research Repository (PURR) is a university...

Q-bank

09 May 2024

Q-bank offers descriptions of well characterized regulated plants pests. It comprises ecological, morphological, physiological, and sequence data of items that are available in physical collections of plantpathogenic bacteria, fungi, insects, nematodes, phytoplasmas,...

QCD(quantum chromodynamics)

09 May 2024

The first gateway developed at NERSC was QCD (quantum chromodynamics), designed to help scientists gain new insights into particle physics using QCD, the mathematical theory that describes the strong force that binds quarks together into protons, neutrons and other...

QuaFit

09 May 2024

QUAFIT is a novel method for the quaternary structure determination from small-angle x-ray and neutron scattering data. QUAFIT is based on the idea that asymmetric monomers, formed by rigid domains of known atomic structure possibly connected by flexible linkers of...

QUBEShub

09 May 2024

To improve learning opportunities for all students enrolled in undergraduate biology courses by reflecting the centrality of quantitative approaches in modern biology.

QUSP Gateway

09 May 2024

The QUSP science gateway for Quantum simulation tools developed and distributed by Colorado School of Mines department of Physics. The codes can be downloaded by anyone to compile and run on their own in HPC systems. To do so, individuals need a...

RADICAL Cybertools

09 May 2024

RADICAL Cybertools is an abstractions-based suite of well-defined capabilities that are architected for scalable, interoperable and sustainable approaches to support science on a range of high-performance and distributed computing systems. It currently...

RCSB PDB

09 May 2024

This resource is powered by the Protein Data Bank archive-information about the 3D shapes of proteins, nucleic acids, and complex assemblies that helps students and researchers understand all aspects of biomedicine and agriculture, from protein synthesis to health...

Reactome

09 May 2024

REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...

REDCap (Research Electronic Data Capture)

09 May 2024

REDCap (Research Electronic Data Capture) is a secure web application for building and managing online surveys and databases. While REDCap can be used to collect virtually any type of data (including 21 CFR Part 11, FISMA, and HIPAA-compliant environments), it is...

Registry of Research data Repositories (re3data)

09 May 2024

re3data.org is a global registry of research data repositories that covers research data repositories from different academic disciplines. It presents repositories for the permanent storage and access of data sets to researchers, funding bodies, publishers and...

RepeatExplorer

09 May 2024

RepeatExplorer is a computational pipeline designed to identify and characterize repetitive DNA elements in next generation sequencing data from plant and animal genomes. It employs graph-based clustering (Novak et al. 2010) of sequence reads to identify repetitive...

Research and Education Activities in Laboratory Mechatronics (REALM)

09 May 2024

The aim of the REALM project is to create generic network-driven services for access to and use of experimental devices for research and education. The short-term target is an experimental mechatronics (robotic components) facility that is available to engineering...

Research Platform for Smart Facilities Management (RP-SMARF)

09 May 2024

Research Platform for Smart Facilities Management (RP-SMARF) is the first cloud-based platform to allow widely-dispersed researchers to share scattered data analysis tools, databases and expertise toward building smart facilities in the increasingly interconnected...

Rfam

09 May 2024

The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs).

Rhea

09 May 2024

Rhea is an expert curated resource of biochemical reactions designed for the annotation of enzymes and genome-scale metabolic networks and models.

RNA World

09 May 2024

RNA World (beta) is a distributed supercomputer that uses Internet-connected computers to advance RNA-related research. You can participate by downloading and running a free program on your computer.

ROBETTA - Full-chain Protein Structure Prediction Server

09 May 2024

Robetta provides both ab initio and comparative models of protein domains. Domains without a detectable PDB homolog are modeled with the Rosetta de novo protocol (Simons et al. (1997) J Mol Biol. 268:209-225, Bradley et al. (2005) Science 309 (5742), 1868-71)....

Rosetta@Home

09 May 2024

Rosetta@home needs your help to determine the 3-dimensional shapes of proteins in research that may ultimately lead to finding cures for some major human diseases. By running the Rosetta program on your computer while you don't need it you will help us speed up and...

ROSIE, The Rosetta Online Server that Includes Everyone

09 May 2024 | Science Gateways

ROSIE, the Rosetta Online Server that Includes Everyone, provides a web-based interface to applications in the Rosetta biomolecular structure prediction and design project. Current apps include protein-protein docking, RNA de novo folding, ERRASER, antibody homology...

ROTDIF-web

09 May 2024 | Science Gateways

ROTDIF-web :GenApp-based Science Gateway is for Biomolecular Nuclear Magnetic Resonance (NMR) Data Analysis and Structure Modeling.

rPredictorDB

09 May 2024 | Science Gateways

rPredictorDB is a predictive database of secondary structures of individual RNAs and their formatted plots. The structures are generated by template-based prediction of RNA secondary structure with experimentally identified structures as templates. RNAs with large...

Sage Bionetworks

09 May 2024 | Science Gateways

Sage Bionetworks is a non-profit research organization that seeks to develop predictors of disease and accelerate health research through the creation of open systems, incentives, and standards. We create strategies and platforms that empower researchers to share and...

SASSIE-web

09 May 2024 | Science Gateways

SASSIE-web is a program suite to enable researchers to build structures, perform Monte Carlo and molecular dynamics simulations, calculate neutron and x-ray small-angle scattering and reflectivity data on a wide variety of soft-matter systems. Utilities are provided...