Apache Airavata

09 May 2024

Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.

BamBam

09 May 2024 | Tools

BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...

Benchmark Energy & Geometry Database (BEGDB)

09 May 2024 | Science Gateways

The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate QM calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.

BIGNASim

09 May 2024 | Science Gateways

BIGNASim, a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.

Biodiversity and Climate Change Virtual Laboratory

09 May 2024 | Science Gateways

The Biodiversity and Climate Change Virtual Laboratory (BCCVL) is a “one stop modelling shop” that simplifies the process of biodiversity-climate change modelling.

BioFragment Database (BFDb)

09 May 2024 | Science Gateways

The BioFragment Database (BFDb) is an open-data platform for computational chemistry analysis of noncovalent interactions and collects >3000 bifragment contacts directly from biological systems.

BRENDA

09 May 2024 | Science Gateways

BRENDA is the main collection of enzyme functional data available to the scientific community.

CAZY

09 May 2024 | Science Gateways

The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

cdmHUB

09 May 2024 | Science Gateways

cdmHUB is the premier online portal for composites resources, information, and networking. We host a rapidly growing collection of composites apps and commercial tools that run in the cloud and are accessible through a web browser. cdmHUB also provides...

CILogon

09 May 2024 | Science Gateways

CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...

Citizen Science Alliance

09 May 2024 | Science Gateways

The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...

Citizen Science Alliance

09 May 2024 | Science Gateways

The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...

CLIPC: Constructing Europe's Climate Information Portal

09 May 2024 | Science Gateways

CLIPC provides access to climate information of direct relevance to a wide variety of users, catering for consultant advisers, policy makers, private sector decision makers and scientists, but also interested members of the general public. This one-stop-shop platform...

Compute Canada

09 May 2024 | Science Gateways

Compute Canada enables Canadian researchers to perform world-class research using Advanced Research Computing (ARC) strategies. The organization helps researchers who need ARC in all disciplines and at all scales; from individual researchers to some of the largest...

CottonGen

09 May 2024 | Science Gateways

CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.

Crops in silico

09 May 2024 | Science Gateways

Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...

DipCheck

09 May 2024 | Science Gateways

DipCheck is a validation tool for the evaluation of protein backbone geometry, developed by Joana Pereira and Victor Lamzin at the EMBL Hamburg. The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of the geometry of a 5-atom dipeptide unit:...

Earth Science Information Partners (ESIP)

09 May 2024 | Science Gateways

The Federation of Earth Science Information Partners (ESIP) is an open, networked community that brings together science, data and information technology practitioners. Participation in ESIP is beneficial because it provides an intellectual commons to expose, gather...

European Variation Archive (EVA)

09 May 2024 | Science Gateways

The European Variation Archive (EVA) is an open-access database of all types of genetic variation data from all species.

Galaxy Software Framework

09 May 2024 | Science Gateways

Galaxy software framework is an open-source application. Its goal is to develop and maintain a system that enables researchers without informatics expertise to perform computational analyses through the web. A user interacts with Galaxy through the web by uploading...

GenApp

09 May 2024 | Science Gateways

GenApp is a tool that can help people with existing code generate stand alone applications and science gateways. GenApp gateway generation is based upon definition files. User supplied code is brought into GenApp by writing a definition file and modifying or wrapping...

Genome Database for Rosaceae (GDR)

09 May 2024 | Science Gateways

The Genome Database for Rosaceae is a curated and integrated web-based relational database providing data mining tools and publicly available genomics, genetics and breeding data for Rosaceae (almond, apple, blackberry, cherry, peach, pear, plum, raspberry, rose, and...

Genomics Virtual Laboratory (GVL)

09 May 2024 | Science Gateways

The Genomics Virtual Laboratory (GVL) provides a cloud-based suite of genomics analysis tools for research and training.

Genomicus

09 May 2024 | Science Gateways

Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in...

GenSAS

09 May 2024 | Science Gateways

The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and...