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3DEM (3-D ELECTRON MICROSCOPY)
09 May 2024
A web-based research platform focused on developing and disseminating new technologies for enhanced resolution 3-dimensional electron microscopy.
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ADCIRC
09 May 2024
ADCIRC is a system of computer programs for solving time dependent, free surface circulation and transport problems in two and three dimensions. These programs utilize the finite element method in space allowing the use of highly flexible, unstructured grids. Typical...
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Amber
09 May 2024
Amber is a suite of biomolecular simulation programs. The term "Amber" refers to two things. First, it is a set of molecular mechanical force fields for the simulation of biomolecules (these force fields are in the public domain, and are used in a variety of...
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Amos Gateway
09 May 2024
The overarching goal of the project is create a comprehensive cyberinfrastructure for the atomic, molecular, and optical science (AMOS) community where practitioners can access a synergistic, full-scope platform for computational AMOS. The developers...
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Apache Airavata
09 May 2024
Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.
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AtlanticWave-Software Defined Exchange (SDX)
09 May 2024
AtlanticWave-Software Defined Exchange (SDX) is a distributed intercontinental experimental SDX, supporting research, experimental deployments, prototyping and interoperability testing, on national and international scales.
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BamBam
09 May 2024 | Tools
BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...
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Benchmark Energy & Geometry Database (BEGDB)
09 May 2024 | Science Gateways
The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate QM calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.
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BIGNASim
09 May 2024 | Science Gateways
BIGNASim, a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.
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BioFragment Database (BFDb)
09 May 2024 | Science Gateways
The BioFragment Database (BFDb) is an open-data platform for computational chemistry analysis of noncovalent interactions and collects >3000 bifragment contacts directly from biological systems.
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BOINC: Compute for Science
09 May 2024 | Science Gateways
BOINC lets you help cutting-edge science research using your computer (Windows, Mac, Linux) or Android device. BOINC downloads scientific computing jobs to your computer and runs them invisibly in the background. It's easy and safe. About 30 science projects use...
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BRENDA
09 May 2024 | Science Gateways
BRENDA is the main collection of enzyme functional data available to the scientific community.
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Brown Dog
09 May 2024 | Science Gateways
Brown Dog's goal is to prototype a highly distributed and extensible science driven Data Transformation Service (DTS). As a component of a national research cyberinfrastructure Brown Dog aims at making past and present research data more accessible and more useful to...
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BUSCO
09 May 2024 | Science Gateways
BUSCO v3 provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.
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C++Explorer
09 May 2024 | Science Gateways
This repo builds a JupyterHub/Jupyter notebook server which offers an interactive C++ experience. The primary interface for this is through cling notebooks (cling is the C++ interpreter). We extend the cling notebook with certain magics, (namely %%writefile and...
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Cactus Code
09 May 2024 | Science Gateways
Cactus provides computational scientists and engineers with a collaborative, modular and portable programming environment for parallel high performance computing. Cactus can make use of many other technologies for HPC, such as Samrai, HDF5, PETSc and PAPI, and...
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CANARIE's Research Platforms
09 May 2024 | Science Gateways
The goal of CANARIE’s Research Software Program is to accelerate discovery and give Canada a first-mover advantage in accessing and leveraging digital infrastructure resources and tools.
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CAZY
09 May 2024 | Science Gateways
The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.
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Center for Applied Internet Data Analysis (CAIDA)
09 May 2024 | Science Gateways
The Center for Applied Internet Data Analysis (CAIDA) conducts network research and builds research infrastructure to support large-scale data collection, curation, and data distribution to the scientific research community. The group, located at the federally funded...
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Chem Compute
09 May 2024 | Science Gateways
The Chem Compute website allows students to easily access state of the art computational software for free. Our hope is that this will enable faculty to incorporate computational chemistry into their undergraduate teaching and research curriculum without the hassle...
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CILogon
09 May 2024 | Science Gateways
CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...
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CIPRES Portal for inference of large phylogenetic trees
09 May 2024 | Science Gateways
Cyberinfrastructure for Phylogenetic Research (CIPRES) project is an open collaboration funded by the National Science Foundation. The goal of the CIPRES project is to enable large-scale phylogenetic reconstructions. For more information please see www.phylo.org. We...
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Citizen Science Alliance
09 May 2024 | Science Gateways
The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...
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Citizen Science Alliance
09 May 2024 | Science Gateways
The CSA is a collaboration of scientists, software developers and educators who collectively develop, manage and utilise internet-based citizen science projects in order to further science itself, and the public understanding of both science and of the scientific...
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CitSci.org
09 May 2024 | Science Gateways
We support your citizen science. At CitSci.org, you create your own projects where trained volunteers and scientists together answer local, regional, and global questions, inform natural resource decisions, advance scientific understanding, and improve environmental...