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Apache Airavata
09 May 2024
Apache Airavata is a software framework that enables you to compose, manage, execute, and monitor large scale applications and workflows on distributed computing resources such as local clusters, supercomputers,computational grids, and computing clouds.
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ATLAS@Home
09 May 2024
ATLAS@Home is a research project that uses volunteer computing to run simulations of the ATLAS experiment at CERN. You can participate by downloading and running a free program on your computer.
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BamBam
09 May 2024 | Tools
BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...
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Benchmark Energy & Geometry Database (BEGDB)
09 May 2024 | Science Gateways
The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate QM calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.
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BIGNASim
09 May 2024 | Science Gateways
BIGNASim, a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.
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BioFragment Database (BFDb)
09 May 2024 | Science Gateways
The BioFragment Database (BFDb) is an open-data platform for computational chemistry analysis of noncovalent interactions and collects >3000 bifragment contacts directly from biological systems.
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BRENDA
09 May 2024 | Science Gateways
BRENDA is the main collection of enzyme functional data available to the scientific community.
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CAZY
09 May 2024 | Science Gateways
The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.
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CILogon
09 May 2024 | Science Gateways
CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...
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CottonGen
09 May 2024 | Science Gateways
CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.
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Crops in silico
09 May 2024 | Science Gateways
Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...
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CyVerse
09 May 2024 | Science Gateways
CyVerse fills a niche created by the computing epoch and a rapidly evolving world. Developing solutions to today’s grand scientific challenges means that we must understand how the organisms that contribute to our food, fuels, and ecosystem are shaped by interactions...
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DipCheck
09 May 2024 | Science Gateways
DipCheck is a validation tool for the evaluation of protein backbone geometry, developed by Joana Pereira and Victor Lamzin at the EMBL Hamburg. The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of the geometry of a 5-atom dipeptide unit:...
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e-Biogenouest
09 May 2024 | Science Gateways
e-Biogenouest is an open, web-based platform for scientific collaboration in Life Sciences. It represents the gate towards a Western France Virtual Research Environment (VRE) disseminating e-Science concepts into Life Sciences. This VRE is a first step to go towards...
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Earth Science Information Partners (ESIP)
09 May 2024 | Science Gateways
The Federation of Earth Science Information Partners (ESIP) is an open, networked community that brings together science, data and information technology practitioners. Participation in ESIP is beneficial because it provides an intellectual commons to expose, gather...
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European Variation Archive (EVA)
09 May 2024 | Science Gateways
The European Variation Archive (EVA) is an open-access database of all types of genetic variation data from all species.
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Galaxy Software Framework
09 May 2024 | Science Gateways
Galaxy software framework is an open-source application. Its goal is to develop and maintain a system that enables researchers without informatics expertise to perform computational analyses through the web. A user interacts with Galaxy through the web by uploading...
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GenApp
09 May 2024 | Science Gateways
GenApp is a tool that can help people with existing code generate stand alone applications and science gateways. GenApp gateway generation is based upon definition files. User supplied code is brought into GenApp by writing a definition file and modifying or wrapping...
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Genome Database for Rosaceae (GDR)
09 May 2024 | Science Gateways
The Genome Database for Rosaceae is a curated and integrated web-based relational database providing data mining tools and publicly available genomics, genetics and breeding data for Rosaceae (almond, apple, blackberry, cherry, peach, pear, plum, raspberry, rose, and...
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Genomics Virtual Laboratory (GVL)
09 May 2024 | Science Gateways
The Genomics Virtual Laboratory (GVL) provides a cloud-based suite of genomics analysis tools for research and training.
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Genomicus
09 May 2024 | Science Gateways
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in...
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GenSAS
09 May 2024 | Science Gateways
The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and...
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Globus: Research data management simplified
09 May 2024 | Science Gateways
Globus is a secure, reliable research data management service. With Globus, you can move, share, publish & discover data via a single interface. Whether your files live on a supercomputer, lab cluster, tape archive, public cloud or your laptop, you can manage them...
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HRGRN
09 May 2024 | Science Gateways
We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...
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INCA: Monitoring Tool
09 May 2024 | Science Gateways
Determining whether a Grid is up in the face of complex Grid software deployments can be difficult and depends on the types of applications and users that utilize it. By detailing a set of software, services, and features that should be available on a Grid in a...