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Neotoma Paleoecology Database
09 May 2024
Neotoma Paleoecology Database and Community is an online hub for data, research, education, and discussion about paleoenvironments. Anyone with an Internet connection can access Neotoma.
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Paleobiology Database (PBDB)
09 May 2024
The Paleobiology Database is a public database of paleontological data that anyone can use, maintained by an international non-governmental group of paleontologists. You can explore the data online in the Navigator, which lets you filter fossil occurrences by time,...
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SoyBase
09 May 2024
SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include...
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ODM2(Observations Data Model 2)
09 May 2024
ODM2 is an information model and supporting software ecosystem for feature-based earth observations, designed to facilitate interoperability across scientific disciplines and domain cyberinfrastructures. For example, a single ODM2 database can readily integrate...
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BioFragment Database (BFDb)
09 May 2024
The BioFragment Database (BFDb) is an open-data platform for computational chemistry analysis of noncovalent interactions and collects >3000 bifragment contacts directly from biological systems.
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DipCheck
09 May 2024
DipCheck is a validation tool for the evaluation of protein backbone geometry, developed by Joana Pereira and Victor Lamzin at the EMBL Hamburg. The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of the geometry of a 5-atom dipeptide unit:...
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Medicago truncatula genome database
09 May 2024
Medicago truncatula, a close relative of alfalfa, is a preeminent model for the study of the processes of nitrogen fixation, symbiosis, and legume genomics. The sequencing project was initiated with a generous grant from Samuel Roberts Noble Foundation (link is...
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MetaboLights
09 May 2024
MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and...
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BRENDA
09 May 2024
BRENDA is the main collection of enzyme functional data available to the scientific community.
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CAZY
09 May 2024
The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.
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IntAct Molecular Interaction Database
09 May 2024
IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.
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IntEnz
09 May 2024
IntEnz (Integrated relational Enzyme database) is a freely available resource focused on enzyme nomenclature. IntEnz is created in collaboration with the Swiss Institute of Bioinformatics (SIB). This collaboration is responsible for the production of the ENZYME...
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MicroScope
09 May 2024 | Science Gateways
MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.
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MicroScope
09 May 2024 | Science Gateways
MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.
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Reactome
09 May 2024 | Science Gateways
REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...
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Reactome
09 May 2024 | Science Gateways
REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome...
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Rhea
09 May 2024 | Science Gateways
Rhea is an expert curated resource of biochemical reactions designed for the annotation of enzymes and genome-scale metabolic networks and models.
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UniProt
09 May 2024 | Science Gateways
The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information.
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OMA
09 May 2024 | Science Gateways
The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.
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OMA
09 May 2024 | Science Gateways
The OMA (“Orthologous MAtrix”) project is a method and database for the inference of orthologs among complete genomes.
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Phylogeny.fr
09 May 2024 | Science Gateways
Phylogeny.fr has been designed to provide a high performance platform that transparently chains programs relevant to phylogenetic analysis in a comprehensive, and flexible pipeline. Although phylogenetic aficionados will be able to find most of their favorite tools...
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InterRidge Vents Database
09 May 2024 | Science Gateways
InterRidge Vents Database is to provide a comprehensive list of active submarine hydrothermal vent fields for use in academic research and education.
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HRGRN
09 May 2024 | Science Gateways
We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...
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Molecular Space
09 May 2024 | Science Gateways
The Clean Energy Project (CEP) is a virtual high-throughput discovery and design effort for the next generation of plastic solar cell materials. We study millions of candidate structures to identify suitable compounds for the harvesting of renewable energy from the...
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European Variation Archive (EVA)
09 May 2024 | Science Gateways
The European Variation Archive (EVA) is an open-access database of all types of genetic variation data from all species.