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  1. C++Explorer

    12 Nov 2020

    This repo builds a JupyterHub/Jupyter notebook server which offers an interactive C++ experience. The primary interface for this is through cling notebooks (cling is the C++ interpreter). We extend the cling notebook with certain magics, (namely %%writefile and...

  2. FutureGateway Framework

    12 Nov 2020

    The FutureGateway Framework is a software environment aiming to build quickly and securely well structured Science Gateways. It consists of a set of services, scripts and utilities aiming to ease the creation and the maintenance of their related ScienceGateays...

  3. The Agave Platform

    05 Oct 2020

    The Agave Platform is an open source, Science-as-a-Service solution for hybrid cloud computing. It provides a collection of RESTful web services that covering everything from standards-based authentication and authorization to computational, data, and...

  4. Jupyter Notebook

    31 Oct 2019

    The Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data...

  5. CILogon

    31 Oct 2019

    CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...

  6. Petrel: A Programmatically Accessible Research Data Service

    16 Oct 2019

    Petrel is a pilot of data service for researchers that provides a simple and intuitive interface for self-managed project-based data sharing capability.The service provides storage on disks owned and managed by ALCF, and has a total capacity of 3 PB of usable ...

  7. CANARIE's Research Platforms

    11 Sep 2019

    The goal of CANARIE’s Research Software Program is to accelerate discovery and give Canada a first-mover advantage in accessing and leveraging digital infrastructure resources and tools.

  8. Wheat Tilling

    11 Sep 2019

    Wheat Target Induced Local Lesions In Genome (TILLING) project based on the tetraploid wheat line Triticum turgidum cv. Kronos. This project entails targeted re-sequencing of the protein coding regions of over 1500 EMS mutagenized individuals from the Kronos...

  9. TreeGenes

    11 Sep 2019

    TreeGenes is a collection of forest tree genome databases and other forest genetic information resources for the international forest genetics community. Dendrome is part of a larger collaborative effort to construct genome databases for major crop and forest...

  10. GenSAS

    11 Sep 2019

    The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and...

  11. ORCA(Quantum Chemistry Program)

    11 Sep 2019

    The program ORCA is a modern electronic structure program package. ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of...

  12. BamBam

    11 Sep 2019

    BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...

  13. Genomicus

    11 Sep 2019

    Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in...

  14. Genomics Virtual Laboratory (GVL)

    11 Sep 2019

    The Genomics Virtual Laboratory (GVL) provides a cloud-based suite of genomics analysis tools for research and training.

  15. Genome Database for Rosaceae (GDR)

    11 Sep 2019

    The Genome Database for Rosaceae is a curated and integrated web-based relational database providing data mining tools and publicly available genomics, genetics and breeding data for Rosaceae (almond, apple, blackberry, cherry, peach, pear, plum, raspberry, rose, and...

  16. HRGRN

    11 Sep 2019

    We developed HRGRN, a Graph search-empowered integrative database of Arabidopsis signaling transduction, metabolism, and gene regulation networks, with an emphasis on hormone signaling and gene regulatory pathways. The database is designed to host and discover...

  17. The Triticeae Toolbox (T3)

    11 Sep 2019

    T3 is the webportal for the data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data...

  18. VEP

    11 Sep 2019

    VEP (Variant Effect Predictor) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

  19. Vega

    11 Sep 2019

    Vega is a repository for high-quality gene models produced by the manual annotation of vertebrate genomes.

  20. NEWT(NERSC Web Toolkit)

    11 Sep 2019

    NEWT is bringing High Performance Computing (HPC) to the web through easy to write web applications. We think that writing applications for the web should be a simple task. We want to make HPC resources accessible and useful to scientists who are more comfortable...

  21. NCBI Genome Workbench

    11 Sep 2019

    Genome Workbench offers researchers a rich set of integrated tools for studying and analyzing genetic data. Users can explore and compare data from multiple sources including the NCBI databases or the user’s own private data. Data analysis in Genome Workbench is...

  22. CottonGen

    11 Sep 2019

    CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.

  23. ORCA (Open Resource Control Architecture)

    11 Sep 2019

    ORCA is a software framework and open-source platform for managing a programmatically controllable shared substrate, which may contain any combination of servers, storage, networks, or other components. This class of systems is often called cloud computing or utility...

  24. OSiRIS - Open Storage Research Infrastructure

    11 Sep 2019

    OSiRIS has storage resources at Wayne State University, Michigan State University, and University of Michigan. We can store data spread across all three sites or target storage resources at a subset of the sites. The end goal is that researchers have a readily...

  25. USQCD

    11 Sep 2019

    USQCD is a collaboration of US scientists developing and using large-scale computers for calculations in lattice quantum chromodynamics. Lattice QCD calculations allow us to understand the results of particle and nuclear physics experiments in terms of QCD, the...