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  1. C++Explorer

    12 Nov 2020

    This repo builds a JupyterHub/Jupyter notebook server which offers an interactive C++ experience. The primary interface for this is through cling notebooks (cling is the C++ interpreter). We extend the cling notebook with certain magics, (namely %%writefile and...

  2. FutureGateway Framework

    12 Nov 2020

    The FutureGateway Framework is a software environment aiming to build quickly and securely well structured Science Gateways. It consists of a set of services, scripts and utilities aiming to ease the creation and the maintenance of their related ScienceGateays...

  3. The Agave Platform

    05 Oct 2020

    The Agave Platform is an open source, Science-as-a-Service solution for hybrid cloud computing. It provides a collection of RESTful web services that covering everything from standards-based authentication and authorization to computational, data, and...

  4. Jupyter Notebook

    31 Oct 2019

    The Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data...

  5. CILogon

    31 Oct 2019

    CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...

  6. Petrel: A Programmatically Accessible Research Data Service

    16 Oct 2019

    Petrel is a pilot of data service for researchers that provides a simple and intuitive interface for self-managed project-based data sharing capability.The service provides storage on disks owned and managed by ALCF, and has a total capacity of 3 PB of usable ...

  7. Plant Genomics

    11 Sep 2019

    Plant genomics is a simple expansion of the scope of genomics at the National Center for Biotechnology Information (NCBI). NCBI provides the tools for storage of and analysis of nucleotide sequence such as, respectively, GenBank and BLAST and the capability to...

  8. CANARIE's Research Platforms

    11 Sep 2019

    The goal of CANARIE’s Research Software Program is to accelerate discovery and give Canada a first-mover advantage in accessing and leveraging digital infrastructure resources and tools.

  9. Multiscale Complex Genomics (MuG) Virtual Research Environment

    11 Sep 2019

    The MuG Virtual Research Environment supports the expanding 3D/4D genomics community by developing tools to integrate the navigation in genomics data from sequence to 3D/4D chromatin dynamics data.

  10. ORCA(Quantum Chemistry Program)

    11 Sep 2019

    The program ORCA is a modern electronic structure program package. ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of...

  11. maizeGDB

    11 Sep 2019

    MaizeGDB (maize genetics and genomics database) is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.

  12. NGSEP (Next Generation Sequencing Eclipse Plugin)

    11 Sep 2019

    NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. NGSEP also...

  13. GenomeSpace

    11 Sep 2019

    GenomeSpace is a cloud-based interoperability framework to support integrative genomics analysis through an easy-to-use Web interface. GenomeSpace provides access to a diverse range of bioinformatics tools, and bridges the gaps between the tools, making it easy to...

  14. LegumeIP

    11 Sep 2019

    LegumeIP is an integrative database and bioinformatics platform for comparative genomics and transcriptomics to facilitate the study of gene function and genome evolution in legumes,to understand mechanisms that are fundamental to the legume species, especially the...

  15. GnpIS(Genetic and Genomic Information System)

    11 Sep 2019

    The tool allows plant scientists or breeders to get associations values between traits and markers obtained in several association studies. Several filters are available to refine the query, such as the species, trait (s), or marker (s) or panel of germplasms. The...

  16. Omics

    11 Sep 2019

    The RDS Omics project is an RDS-funded flagship project to provide cloud-based data services and tools for Australian Life Science Researchers to combine, analyse and interpret genomic (DNA), transcriptomic (RNA), proteomic (proteins) and metabolomic (small...

  17. OMICTools

    11 Sep 2019

    OMICtools is the first community search platform offering an intuitive search experience to retrieve biological data analysis tools. Connect with users to share and discuss tools. Bridge the gap between life science and computational biology.

  18. CTD² Data Portal

    11 Sep 2019

    CTD2 bridges the gap between the enormous volumes of data generated by genomic characterization studies and the ability to use these data for the development of human cancer therapeutics. It specializes in computational and functional genomics approaches critical for...

  19. iNquiry

    11 Sep 2019

    The iNquiry is a BioTeam production. BioTeam is a high-performance consulting practice. We are dedicated to delivering objective, technology agnostic solutions to life science researchers. We leverage the right technologies customized to our clients unique needs in...

  20. Wheat3BMine

    11 Sep 2019

    Wheat3BMine is a data warehouse dedicated to wheat 3B chromosome. It is developed using InterMine technology, providing a fast, flexible and user friendly access to integrated data by multiple ways: a browser, a query builder and a region search tool. Wheat3BMine...

  21. IGSR: The International Genome Sample Resource

    11 Sep 2019

    The goal of the 1000 Genomes Project was to find most genetic variants with frequencies of at least 1% in the populations studied.

  22. NEWT(NERSC Web Toolkit)

    11 Sep 2019

    NEWT is bringing High Performance Computing (HPC) to the web through easy to write web applications. We think that writing applications for the web should be a simple task. We want to make HPC resources accessible and useful to scientists who are more comfortable...

  23. ORCA (Open Resource Control Architecture)

    11 Sep 2019

    ORCA is a software framework and open-source platform for managing a programmatically controllable shared substrate, which may contain any combination of servers, storage, networks, or other components. This class of systems is often called cloud computing or utility...

  24. OSiRIS - Open Storage Research Infrastructure

    11 Sep 2019

    OSiRIS has storage resources at Wayne State University, Michigan State University, and University of Michigan. We can store data spread across all three sites or target storage resources at a subset of the sites. The end goal is that researchers have a readily...

  25. USQCD

    11 Sep 2019

    USQCD is a collaboration of US scientists developing and using large-scale computers for calculations in lattice quantum chromodynamics. Lattice QCD calculations allow us to understand the results of particle and nuclear physics experiments in terms of QCD, the...